Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctaacataacttattaattcagtttcctttgtgtttaatggatcacccttatttggtttgcttgtgtctcaactcctaacaatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG

Basic information

species Zea mays
transcript GRMZM2G016106_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G016106_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g45240.4 (Oryza sativa), 3'ss of exon 1
gtagctaacataacttattaattcagtttcctttgtgtttaatggatcacccttatttggtttgcttgtgtctcaactcctaacaatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG
          ||  | ||      |  || ||   |  || |||    |    | |||  ||||  | | ||||| |   |||  |||| |||| ||||| ||  | || ||||||||||| ||||| ||||| ||||| || || || || ||||| || |||||||| || ||||||||||||||||||
---------gtatgtcatgctcctaactttctaatttatttatg--ctattgatttttcttttggatctatctcatcgtgtaaatatttacagATGACTATCGCTTATTTTGTGGAGATCTGGGCAATGAAGTCAATGACGACGTCCTCTCAAAAGCTTTTTCACGGTTCCCCTCCTTCAACATGGCAAGG

upper sequence: GRMZM2G016106_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA10G30900.2 (Glycine max), 3'ss of exon 2
-----------gtagctaacata-acttattaattcagtttcctttgtgtttaatggatcacccttatttggtttgcttgtgtctcaactcctaacaatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG
            |||   | ||  | ||  | |||  | ||  ||   |||  ||   | | | | | ||| |||   | | | |||  |    |  |||   ||| || || ||||| |||||||| ||||| || ||||| || |||||||||||||| || |||||||| ||||| ||||| ||||| ||||||||| | 
tgtatgtgtgtttagtctatatggaatttgtgattgtgatt--ttgaagttagataattaatcatgaattgatttatctttttttcatttttggatgatt---agATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCACGA

upper sequence: GRMZM2G016106_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA20G36570.1 (Glycine max), 3'ss of exon 2
---------gtagctaacata-acttattaattcagtttcctttgtgtttaatggatcacccttatttggtttgcttgtgtctcaactcctaacaatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG
          ||   ||  |  | | || | ||        ||   |||  ||     | | | | ||| |||   | | | || | |    |  |||   ||| || || ||||| |||||||| ||||| || ||||| || |||||||||||||| || |||||||| ||||||||||| ||||| ||| ||||| | 
cctgagcctatatggaatttgtaatcatgattttgaagattttgaagttagataagaaatcgtgaattgatttttctttttttctattttggattatt---agATGATTATCGGCTCTTCTGTGGGGATCTTGGTAACGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGGTTTCCTTCCTTTAACTTGGCACGA

upper sequence: GRMZM2G016106_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT3G04500.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------------------------------------------gtagctaacataacttatta-attcagtttcctttgtgtttaatggatcacccttatttggtttgcttgtgtctcaactcctaacaatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG
                                                                  |  | || ||||  |  | | |   ||  |  |   |||||  |   || |  || ||    | | ||   | |    | |||||| || ||||| ||||| || ||||||||||| ||||| || |||||||| |||||||||||||| |||||||||||  |  | || ||  ||||||| ||||| | |
gtaagctctgctcgtctttttcttcttctttcccttgattttgctgattgttgttttagtttacgggatggtatcatagttgttcataggtaggattttagatgttttct---tctctgttgttaaaatagatttcttatatctttctaacatttggcagATGACTATCGTCTGTTCTGTGGTGATCTTGGGAACGAAGTGAATGATGATGTTCTTTCCAAAGCATTTGCTAGATTCCCCACCTTCAATATGGCCAAG

upper sequence: GRMZM2G016106_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv14s0036g00630.t01 (Vitis vinifera), 3'ss of exon 2
gtagctaacataacttat-taattcagtttcctttgtgtttaatggatcaccctt--atttggtttgcttgtgtctc----aactcctaacaatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG
 |   | |||| | |  | | || | || |   ||        |   |    | |  || || ||  ||  || ||     ||||  |  ||   |||||| || || ||  | || ||||| ||||| ||||| || || |||||||||||||| || |||||||| ||||| ||||| |||||||| ||||| |  
ttcattgacattattcctatgatgctgtatatgttcctacccctcctttttgcctggatatgcttctctcatgcctggcagaactgttggcatcctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAAA

upper sequence: GRMZM2G016106_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv09s0018g01710.t01 (Vitis vinifera), 3'ss of exon 2
gtagctaacataacttat-taattcagtttcctttgtg--tttaatggatcacccttatttggtttgcttgtgtctc----aactcctaacaatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG
 |   | |||    || | | || |  |||   ||      |       |  ||   || || ||  ||  ||  |     ||||  |  || | |||||| || || ||  | || ||||| ||||| ||||| || || || ||||||||||| || |||||||| ||||| ||||| |||||||| ||||| || 
ttcattcacactgtttctatgatgctatttatgttcctacctctcctttttgcctggatatgcttctctcatgcttggaagaactgttggcattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCCAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76284046|gb|DV023614.1|DV023614
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|148955971|gb|EC901692.2|EC901692
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|91877007|gb|EB406964.1|EB406964
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTT
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTT
EST: gi|50322967|gb|CO518093.1|CO518093
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|71299286|gb|DR785657.1|DR785657
EST:     TGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: TGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|67016497|gb|CO445246.1|CO445246
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|71307240|gb|DR789787.1|DR789787
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|78087828|gb|DV516221.1|DV516221
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|32914983|gb|CF019795.1|CF019795
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|149076368|gb|EE164986.2|EE164986
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|33100465|gb|CF060425.1|CF060425
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCGGCGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|50322656|gb|CO517782.1|CO517782
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|149070600|gb|EE159005.2|EE159005
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|21891603|gb|BQ744816.1|BQ744816
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|71307238|gb|DR789786.1|DR789786
EST:     TGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: TGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|31355235|gb|CD439592.1|CD439592
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|76021667|gb|DT948837.1|DT948837
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|149070599|gb|EE159004.2|EE159004
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|148962986|gb|EE013934.2|EE013934
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|67022274|gb|CO451023.1|CO451023
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|148954322|gb|EC899733.2|EC899733
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|91051021|gb|EB161439.1|EB161439
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|60397535|gb|DN230351.1|DN230351
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|60354882|gb|DN221855.1|DN221855
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|50325268|gb|CO520394.1|CO520394
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|148928375|gb|EE285065.2|EE285065
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|76021666|gb|DT948836.1|DT948836
EST:     CGCTGCCGGACAATCCTGGGAGGATCTTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|76284045|gb|DV023613.1|DV023613
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|148930497|gb|EE285066.2|EE285066
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|71420217|gb|DR805043.1|DR805043
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|78114283|gb|DV532672.1|DV532672
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|5555288|gb|AI881239.1|AI881239
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|71299288|gb|DR785658.1|DR785658
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|93015051|gb|EB640571.1|EB640571
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|71763302|gb|DR961239.1|DR961239
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|78087827|gb|DV516220.1|DV516220
EST:     TCCTACCCTCCCTGACTGGCCTGAAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGAT
genomic: TCCTACCCTCACTGACTGGCCTG-AAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGAT
EST: gi|71449013|gb|DR830063.1|DR830063
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|71435062|gb|DR816112.1|DR816112
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGAATCTAGGCAACGAAGTTAATGATGAT
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGA-TCTAGGCAACGAAGTTAATGATGAT
EST: gi|148982967|gb|EE028858.2|EE028858
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
EST: gi|60397750|gb|DN230566.1|DN230566
EST:     CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAA                         ACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG
genomic: CGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 126

AACGCCAGGCCCTCCGATCCCTCTACCAGCAAGAAGCCCATCCCCCGCCGCGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 43

AACGCCAGGCCCTCCGATCCCTCTACCAGCAAGAAGCCCATCCCCCGCCGCGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 50

AACGCCAGGCCCTCCGATCCCTCTACCAGCAAGAAGCCCATCCCCCGCCGCGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 46

AACGCCAGGCCCTCCGATCCCTCTACCAGCAAGAAGCCCATCCCCCGCCGCGCTGCCGGACAATCCTGGGAGGATCCTACCCTCACTGACTGGCCTGAAAgtagctaaca ... caatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatggatcacccttatttggtttgcttgtgtctcaactcctaacaatttgcagACGACTACCGGCTGTTCTGTGGAGATCTAGGCAACGAAGTTAATGATGATGTTCTATCCAAAGCATTCTCACGGTTTCCATCCTTCAACATGGCAAGG
                                       tcctaac  putative branch site (score: 46)
                                          taacaattt  TA-rich tract