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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgataatgcatgcatccttctcgctctgctacatcgctcgcgtttcaaaagataaaaaattcatgttgctctccttgtcctccgcgctttttcagACAGGGTGTTCAACCCGAAGTGCAGCACGCGCCAGGTGTACGAGGAAGGGGCTAAGCAGGTGGCCCTGTCGGTGCTCAGCGGCATCAATT

Basic information

species Zea mays
transcript GRMZM2G015395_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015395_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os09g35890.1 (Oryza sativa), 3'ss of exon 2
gtgggtgataatgcatgcatccttctcgctctgctacatcgctcgcgtttcaaaagataaaaaattcatgttgctctccttgtcctccgcgctttttcagACAGGGTGTTCAACCCGAAGTGCAGCACGCGCCAGGTGTACGAGGAAGGGGCTAAGCAGGTGGCCCTGTCGGTGCTCAGCGGCATCAATT
                      |||   | | ||  |  |||   ||  |  ||    |||    || |   |||| |||| ||  ||| | |||  ||||||||||||||| ||   ||||| ||||| | ||||||||||| ||||| || | |||||| ||| |||| |||||||| || |||||  
---------------------gttcgtacgccgccgc--cgccgccgaatgcaattgcaaaccgctc-tcccgctcaccttctcg-ccgtggtttc-cagACAGGGTGTTCAGCCATGAGTGCGGCACGAGGCAGGTGTACGACGAAGGCGCCAGGCAGGTCGCCATGTCAGTGCTCAGTGGAATCAACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6587632|gb|AW244950.1|AW244950
EST:     CCGCGGCAACATCCCTGAGCGCGCCATGTTCCCCGCCTCCTACACCTACG                         ACAGGGTGTTCAACCCGAAGTGCAGCACGCGCCAGGTGTACGAGGAAGGGG
genomic: CCGCGGCAACATCCCTGAGCGCGCCATGTTCCCCGCCTCCTACACCTACGgtgggtgata ... gctttttcagACAGGGTGTTCAACCCGAAGTGCAGCACGCGCCAGGTGTACGAGGAAGGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtttcaaaagataaaaaattcatgttgctctccttgtcctccgcgctttttcagACAGGGTGTTCAACCCGAAGTGCAGCACGCGCCAGGTGTACGAGGAAGGGGCTAAGCAGGTGGCCCTGTCGGTGCTCAGCGGCATCAATT
                         ttgctctccttgtcct  CT-rich tract
      aaaagataaaaaattc  TA-rich tract