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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgaattcttaattgtaagtccttttcctagaaggcatttcaagttgtaaggagtaggctgcaattttactgtattttgtctccacaatcctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCATTGGGCTCACGACCATATTCGGCAACGTCGACACAAAGGGCGCAACACG

Basic information

species Zea mays
transcript GRMZM2G015344_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015344_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g44370.1 (Oryza sativa), 3'ss of exon 1
--ctgaattcttaattgtaagtccttttcctagaaggcatttcaagttgtaaggagtaggctgcaattt--tactgtattttgtctccacaatcctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCATTGGGCTCACGACCATATTCGGCAACGTCGACACAAAGGGCGCAACACG
   ||  |||| | || || |||   |||  | ||  ||| | || ||  |     ||||   | | ||  | ||   | || ||   |||| | |  ||| ||||||||||||||| ||||| |||||||||||||| || | |||||| ||||| |||||||| |||||||| ||||||  |  |||||||   || || | 
atgtgctttctgatttctatgtc---ttcagaaaatacatctgaatttcaaccttctaggaaactacttcttgctaattcttttccttacaaac-tggttccagATGATAGCATGACAATCCTTATGGCGTTCAGAGCTCCAACTGTGGAGATCATAGGGCTCACAACCATATTTGGCAACACCACCACAAAGAATGCGACTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89759746|gb|DY688465.1|DY688465
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211060404|gb|FL062192.1|FL062192
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211057441|gb|FL062189.1|FL062189
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|89251363|gb|DY623149.1|DY623149
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211054463|gb|FL062169.1|FL062169
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211057429|gb|FL062177.1|FL062177
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|71318567|gb|DR796043.1|DR796043
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211057439|gb|FL062187.1|FL062187
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|71449461|gb|DR830511.1|DR830511
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|51871130|gb|CV126014.1|CV126014
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211054467|gb|FL062173.1|FL062173
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCS                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211054469|gb|FL062175.1|FL062175
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211057432|gb|FL062180.1|FL062180
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|76935894|gb|DV174515.1|DV174515
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211057436|gb|FL062184.1|FL062184
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211060405|gb|FL062193.1|FL062193
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|32803180|gb|CD955416.1|CD955416
EST:     GATCCTGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: GATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|71438819|gb|DR819869.1|DR819869
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|78105410|gb|DV523828.1|DV523828
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|94473161|gb|EB702119.1|EB702119
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211057442|gb|FL062190.1|FL062190
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|149077634|gb|EE166336.2|EE166336
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|76290576|gb|DV030144.1|DV030144
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211054466|gb|FL062172.1|FL062172
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|42491945|gb|CK700991.1|CK700991
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|50330283|gb|CO525409.1|CO525409
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCAC
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCAC
EST: gi|211057428|gb|FL062176.1|FL062176
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211054465|gb|FL062171.1|FL062171
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211057438|gb|FL062186.1|FL062186
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211057433|gb|FL062181.1|FL062181
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|71439185|gb|DR820235.1|DR820235
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211057437|gb|FL062185.1|FL062185
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGGTGGAAATC
genomic: C-AGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTG-TGGAAATC
EST: gi|211054468|gb|FL062174.1|FL062174
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATYCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
EST: gi|211057431|gb|FL062179.1|FL062179
EST:     CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCG                         ATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA
genomic: CCAGCAGATCCGCCGCGACAAGCTCATCATCGACACGGATCCCGGCATCGgtgcgtcccc ... ctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaaggagtaggctgcaattttactgtattttgtctccacaatcctatttctagATGATAGCATGACGATCCTAATGGCGTTCAGAGCACCTAGTGTGGAAATCATTGGGCTCACGACCATATTCGGCAACGTCGACACAAAGGGCGCAACACG
                                           tcctatttct  CT-rich tract
                 aattttactgtatttt  TA-rich tract