Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21481223|gb|BQ577906.1|BQ577906EST: TNCAC-AGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
genomic: T-CACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
EST:
gi|211310556|gb|FL467517.1|FL467517EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
EST:
gi|6227264|gb|AW155863.1|AW155863EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
EST:
gi|76012023|gb|DT939193.1|DT939193EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
EST:
gi|21390513|gb|BQ528562.1|BQ528562EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
EST:
gi|14311570|gb|BG901325.1|BG901325EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
EST:
gi|74243702|gb|DT651616.1|DT651616EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgagttgaagcaacaaaaaaaacctgctaacagtttatcttggtcaataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGATCTCGTCACGTGACCACGATTTTCTCTCCGATGTATAGTTAACAAGGAG
tgctaac putative branch site (score: 1)
aacaaaaaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaactggccaacatgaaatttatgctttgtgctttgcatgaacttcgagttgaagcaacaaaaaaaacctgctaacagtttatcttggtcaataattcagGGACATCACAACAACATTCCCCAGCTTTGTGTTTAACTCTGAAGTCGATGATCTCGTCACGTGACCACGATTTTCTCTCCGATGTATAGTTAACAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG