1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagccttaagtaattgttatccatgccctctgatcattttccacgatatagcttttgttctcatccaaatcgggtaatgtagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATCGACAAGAAAAA
species | Zea mays |
transcript | GRMZM2G014975_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGGCTAACCGCATCAGGGAGAAGTACCCCGATAGAATTCCT GTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATCGACAAGAAA
genomic: GAGGCTAACCGCATCAGGGAGAAGTACCCCGATAGAATTCCTgtaagcctta ... ggtaatgtagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATCGACAAGAAA
ctctgatcattttccacgatatagcttttgttctcatccaaatcgggtaatgtagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATCGACAAGAAAAA
ctctgat putative branch site (score: 465)
atcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccttaagtaattgttatccatgccctctgatcattttccacgatatagcttttgttctcatccaaatcgggtaatgtagGTCATTGTTGAGAAGGCCGAGAGGAGTGACATCCCAGACATCGACAAGAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA