Sequence
atgc intronic sequence ATGC exonic sequence...catctcatttatcgtaataaggtgtctactgaccatgttattaataattaccacatatatatttctctgacttagcatgaccaagtgttctcttttgcagAAGTAGAAAACTTGTGCCGGTATGAGCTTCCAAATGAGAGCTGGGAAGTAAATTTGCCTGCTGAAAAGGTGTCTCCTGAGCTCCCAGAACCAACATTAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G014780_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g41740.1 (Oryza sativa), 3'ss of exon 2
catctcatttatc-gtaataaggtgtctactgaccatgttattaataattaccacatatatatttctctgacttagcatgaccaagtgtt-ctcttt-tgcagAAGTAGAAAACTTGTGCCGGTATGAGCTTCCAAATGAGAGCTGGGAAGTAAATTTGCCTGCTGAAAAGGTGTCTCCTGAGCTCCCAGAACCAACATTAGG
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ctcctagtacacctatgctgacctgatatttgagcac-tcataagcgttta--actaatatatttgtccagccatacataaccatgcgtttctctttctgcagAAAAGGAAAACTTGTGCCTTTATGGGTTTCCCAATGAGCATTGGGAAGTAAATTTGCCCGCAGAAGAGGTGCCACCTGAGCTCCCAGAGCCAGCATTGGG
upper sequence: GRMZM2G014780_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT5G26210.1 (Arabidopsis thaliana), 3'ss of exon 2
catctcattt-atcgtaat-aaggtgtctactgaccatgttattaataattaccacatatatatttctctgacttagcatgaccaagtgttctcttttgcagAAGTAGAAAACTTGTGCCGGTATGAGCTTCCAAATGAGAGCTGGGAAGTAAATTTGCCTGCTGAAAAGGTGTCTCCTGAGCTCCCAGAACCAACATTAGG
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-gtagagtttgagcggagtcaaagtgttgattttttgtttgacttggttttaattta-aggttttttgaacaattgtcatcattttccttttgtgattatagAAAAGGAGAACCTTTGCCTTTACGGACATCCAAATGAGCACTGGGAAGTGAATTTGCCAGCTGAAGAGGTTCCTCCTGAGCTCCCAGAGCCTGTCTTGGG
upper sequence: GRMZM2G014780_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv11s0016g01500.t01 (Vitis vinifera), 3'ss of exon 2
catctcatttatcgtaataaggtgtctactgaccatgttattaataattaccacatatatatttct-ctgacttagcatgaccaagt-gttctcttttgcagAAGTAGAAAACTTGTGCCGGTATGAGCTTCCAAATGAGAGCTGGGAAGTAAATTTGCCTGCTGAAAAGGTGTCTCCTGAGCTCCCAGAACCAACATTAGG
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--ttcaaaggagaacaaatattcatacctactttatgtggctaccttgcttcagttaccgatggttattgacatgttgtattcaactcactctatattgcagAGAAGGAAAATCTTTGCCTTTATGGATTCCCTAATGAACTGTGGGAAGTTAATTTACCTGCTGAAGAGGTGCCGCCTGAGCTCCCTGAACCTGCCTTAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattaccacatatatatttctctgacttagcatgaccaagtgttctcttttgcagAAGTAGAAAACTTGTGCCGGTATGAGCTTCCAAATGAGAGCTGGGAAGTAAATTTGCCTGCTGAAAAGGTGTCTCCTGAGCTCCCAGAACCAACATTAGG
ctctgac putative branch site (score: 3)
tgttctctttt putative PPT
acatatatatttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catctcatttatcgtaataaggtgtctactgaccatgttattaataattaccacatatatatttctctgacttagcatgaccaagtgttctcttttgcagAAGTAGAAAACTTGTGCCGGTATGAGCTTCCAAATGAGAGCTGGGAAGTAAATTTGCCTGCTGAAAAGGTGTCTCCTGAGCTCCCAGAACCAACATTAGG
- - - - - - - - - - - - tctactg
- - - - - - - - - - - - - - - - -catgtta
- - - - - - - - - - - - - - - - - - - - - - - - - ccacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgac