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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtcccgtcgtcctcggtcttcttgcagcagcagtagcagccgtgaaccaatttcctgtgcggccgtgacgatggcgagctaatcgatcgattgctaactctctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACCGCAAGTACCCGAACGGGTCCAGGCCCAACCGCGCCGCCGGGGCTGGGTA

Basic information

species Zea mays
transcript GRMZM2G014653_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014653_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g66120.1 (Oryza sativa), 3'ss of exon 1
gtacgtcccgtcgtcctcggtcttcttgcagcagcagtagcagccgtgaaccaatttcctgtgcggccgtgacgatggcgagctaatcgatcgattgctaactctctgt-gtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACCGCAAGTACCCGAACGGGTCCAGGCCCAACCGCGCCGCCGGGGCTGGGTA
|||||     || |||||   | || | |  ||    |  |  || | |||           || | |||||   ||      | ||   | | ||| |   |   ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||| | |||||
gtacgata-atcctcctcctccatcctcc--caatcatcaccaccatcaac-----------gccgtcgtga-attgattgattgatt--tggtttgatttgttggtgttgtgtagGGATGGCGCTGTACGGAGAGAAGGAGTGGTACTTCTTCTCCCCGCGAGACCGCAAGTACCCGAACGGGTCGCGGCCGAACCGCGCCGCCGGGTCGGGGTA

upper sequence: GRMZM2G014653_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G26480.1 (Glycine max), 3'ss of exon 1
gtacgtcccgtcgtcctcggtcttcttgcagcagcagtagcagccgtgaaccaatttcctgtgcggccgtgacgatggcgagctaatcgatcgattgctaactctctgt-gtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACCGCAAGTACCCGAACGGGTCCAGGCCCAACCGCGCCGCCGGGGCTGGGTA
                    ||||     |       |   |    ||||  || |     |       |     ||   |   | |  ||  ||| ||     | |||  || ||| |||||  ||||||| ||||| |||||||| || ||| | ||| |||||||||||||||||||||| ||  |||| |||||  |||| ||| | || ||
---------------taaaatcttgcacaaattattctcataattctgaaataaatgataataacttttttttattgataaataatttaatatatt-ctggtgttgtgttatgtagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACCGCAAGTACCCGAACGGTTCGCGGCCGAACCGGTCCGCGGGGACCGGATA

upper sequence: GRMZM2G014653_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA04G42800.1 (Glycine max), 3'ss of exon 1
gtacgtcccgtcgtcctcggtcttcttgcagcagcagtagcagccgtgaaccaatttcctgtgcggccgtgacgatggcgagctaatcgatcgattgctaactctctgt-gtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACCGCAAGTACCCGAACGGGTCCAGGCCCAACCGCGCCGCCGGGGCTGGGTA
                                    ||| ||         ||| |||   |     | |     |        | ||  ||  ||  | | |   | | || ||||  ||||    ||||| ||||| |||||||||||||| || || |||||||| || ||||||||||| |||||||| ||||| || || ||  | || ||
------------------------------------gtaacattatc--ttcaacttctgatatattcttattcttaattcttaattcattcattttttgaattgttattgtacagGATTGGCTTCCTACGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACCGGAAATACCCGAACGGTTCCAGGCCGAACCGGGCGGCGGGAACCGGTTA

upper sequence: GRMZM2G014653_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA06G16440.1 (Glycine max), 3'ss of exon 1
gtacgtcccgtcgtcctcggtcttcttgcagcagcagtagcagccgtgaaccaatttc-ctgtgcggccgtgac-gatggcg-agct-aatcgatcgattgctaactctctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACCGCAAGTACCCGAACGGGTCCAGGCCCAACCGCGCCGCCGGGGCTGGGTA
                                    ||   |    | |     ||||  | || | | |  ||  || ||  || | ||| ||| |||    |  |   ||  |||||  || |     ||||||||||| || ||||||||||| || || ||||| || || ||||||||||| ||  |||| ||||| ||||||||    || ||
--------------------------------gttcgtttaatttcttatggggtttcgttttgtgactgcaactaattgcatagttcaattgattgataatgagttggatg-atgcagAAATTGGCTACTACGGCGAGAAAGAATGGTACTTCTTTTCTCCTCGGGATCGGAAATACCCGAACGGTTCACGGCCGAACCGTGCCGCCGGAAGCGGCTA

upper sequence: GRMZM2G014653_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA04G38560.1 (Glycine max), 3'ss of exon 1
gtacgtcccgtcgtcctcggtcttcttgcagcagcagtagcagccgtgaaccaatttcctgtgcggccgtgacgatggcgagctaatcgatcgattgctaactctctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACCGCAAGTACCCGAACGGGTCCAGGCCCAACCGCGCCGCCGGGGCTGGGTA
             || |     |||||   |     ||       ||||| | | ||||         ||  || |        ||| ||| ||||  | | |   |   |||||  || |   | ||||||||||| || ||||||||||| || || |||||||| || ||||||||||| ||  |||| ||||||||||||||    || ||
-----------gttcgtttagtttcttatgggtttcgttttg--tgtgaaaccaattcc-----aattgtatcgtt--tagttcaattgattgatta-tgagttggtcaatgcagAAATTGGTTTTTACGGCGAGAAAGAATGGTACTTCTTTTCTCCTCGGGACCGGAAATACCCGAACGGTTCACGGCCGAACCGCGCCGCCGGAAGCGGCTA

upper sequence: GRMZM2G014653_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA14G24220.1 (Glycine max), 3'ss of exon 1
-------------------------------------------------gtacgtcccgtcgtcctcggtcttcttgcagcagcagtagcagcc-gtgaaccaatttcctgtgcggccgtgacgatggcgagctaatcgatcgattgctaactctctgt-gtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACCGCAAGTACCCGAACGGGTCCAGGCCCAACCGCGCCGCCGGGGCTGGGTA
                                                   || |    ||||  ||  |||      | || |||   || |   | |  |       | |       |     |    |   | |  ||    |  |       |||  |||||| |||||  ||||||| ||||| |||||||| || ||| | ||| |||||||||||||||||||||| ||  |||| |||||  |||| ||  | |||||
gtaacagtaatacacaaatcgaatccattatctttttttctctcctctgcgactttttttcgttttccttctctgctaaccatcagatccaccttataattctgaaatatataatatttttttattaataaataattttattttcttttggtgtcgtgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACCGCAAGTACCCGAACGGTTCGCGGCCGAACCGGTCCGCGGGAACCGGGTA

upper sequence: GRMZM2G014653_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA06G11970.1 (Glycine max), 3'ss of exon 1
gtacgtcccgtcgtcctcggtcttcttgcagcagcagtagcagccgtgaaccaatttcctgtgcggccgtgacgatggcgagctaatcgatcgattgctaactctctg-tgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACCGCAAGTACCCGAACGGGTCCAGGCCCAACCGCGCCGCCGGGGCTGGGTA
                              | | ||  | ||  | |  |   |||   | | ||                  | ||  ||  |||| ||      |  | | ||||  ||||    || || ||||| |||||||||||||| || || |||||||| || ||||| ||||| || ||||| ||||| || || ||  | || ||
------------------------------gtaacataatcattcattcattcattcattcttcgatttctgattcttaatttttatttattaattgttactgtgttactttacagGATTGGCTACTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACCGGAAATACCCAAACGGTTCGAGGCCGAACCGGGCGGCTGGCACCGGTTA

upper sequence: GRMZM2G014653_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv07s0031g02610.t01 (Vitis vinifera), 3'ss of exon 1
gtacgtcccgtcgtcctcggtcttcttgcagcagcagtagcagcc--gtgaaccaatttcctgtgcggccgtgacgatggcgagctaatcgatcgattgct--aactctctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACCGCAAGTACCCGAACGGGTCCAGGCCCAACCGCGCCGCCGGGGCTGGGTA
                      || |  ||       | | | |   || || |   |  ||       |         |  |   |||      |||  |  || |   | | |||||| ||||| |||||||| || |||||||||||||||||||| ||  |||||||||| || || ||||| || ||||| ||||| || |||||  | || ||
-------------------aatttttgacaaatatgatcgaaactctgtaaatcgtctctctagttcagcaaattttcagaaactgaatttggatatttttggaattgggtttctgcagGAATGGCTCTGTACGGTGAAAAGGAGTGGTACTTCTTCTCTCCAAGGGACCGCAAATATCCCAACGGTTCAAGGCCTAACCGGGCGGCCGGATCCGGCTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211445989|gb|FL293402.1|FL293402
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|211445988|gb|FL293401.1|FL293401
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAAGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|211443877|gb|FL293395.1|FL293395
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAAGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|211443871|gb|FL293389.1|FL293389
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|211443875|gb|FL293393.1|FL293393
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|86471869|gb|DY238239.1|DY238239
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCGTGGCAGCTCCCAG                         GGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|149097014|gb|EE182818.2|EE182818
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|211443873|gb|FL293391.1|FL293391
EST:     ATCATCGCCGAGATCGACCTCTANCA-GTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAAGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: ATCATCGCCGAGATCGACCTCTA-CAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|37419784|gb|CF647577.1|CF647577
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|211443879|gb|FL293397.1|FL293397
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|211446001|gb|FL293414.1|FL293414
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|211448113|gb|FL293415.1|FL293415
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|211443882|gb|FL293400.1|FL293400
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAAGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|211446000|gb|FL293413.1|FL293413
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAAGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|211443878|gb|FL293396.1|FL293396
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAAGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|149078960|gb|EE167805.2|EE167805
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC
EST: gi|93281602|gb|EB673866.1|EB673866
EST:     CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAA                         GGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGAGC
genomic: CATCATCGCCGAGATCGACCTCTACAAGTTCGACCCATGGCAGCTCCCAAgtacgtcccg ... ctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcggccgtgacgatggcgagctaatcgatcgattgctaactctctgtgtgcagGGATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCGCGGGACCGCAAGTACCCGAACGGGTCCAGGCCCAACCGCGCCGCCGGGGCTGGGTA
                                   tgctaac  putative branch site (score: 1)
                                         ctctctgt  CT-rich tract