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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttccccgccggcctcctctgccacctgtatctcgtccgtccgcgctccaccccgcttcgtagtgtttgggccggacgcgcgctccccgcctagggtttcaatctcgcgctgatttatcttctacctcgcgagtctgaccctgcgcttgatggatgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTCGAGAAGCAGATGAGGCTGGCCGGAGATGTCGCCGGCACTCGGAAGGCCG

Basic information

species Zea mays
transcript GRMZM2G014116_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014116_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g63430.2 (Oryza sativa), 3'ss of exon 1
gtgagct----tccccgccggcctcctctgcc---acctgtatctcgtccgtccgcgctccaccccgcttcgtagtgtttgggccggacgcgcgctccccgcctagggtttcaatctcgcgctgatttatcttctacctcgcgagtctgaccctgcgcttgatggatgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTCGAGAAGCAGATGAGGCTGGCCGGAGATGTCGCCGGCACTCGGAAGGCCG
|||||||    ||||  |   ||||| |  ||   |||     | || |  |||| | |     ||    ||    |    | |  | | ||| || | |  |||||||||| |||||  || | || ||||  | ||| || | ||||||||||    |  ||||    ||||||||||  || |||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||||||||  |||||||||
gtgagctcacctccctcctcccctcccccaccccgaccctccgcccgcctctccggggttttggccttcccgcc-cgccccgccgcggcccgcacttctcatctagggtttcgatctcttgcgggttgatctgatgccttgcaa-tctgaccctgtttcttgtggaccgatgcagGAGGGTAACAGTACCAACCTCGATGCGGCGATAGAGTCGCTCCTCAACGTGGAGAAGCAGATGAGGCTGGCCGGCGATGTCGCCGGCACGAGGAAGGCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211424451|gb|FL201057.1|FL201057
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|17931575|gb|BM268535.1|BM268535
EST:     GCCGCCTCACCCGTTTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|31358688|gb|CD443045.1|CD443045
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211429639|gb|FL201076.1|FL201076
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211427058|gb|FL201071.1|FL201071
EST:     GCCGCCTCACCCGTCTACTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211427045|gb|FL201058.1|FL201058
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|32919590|gb|CF024402.1|CF024402
EST:     GCCGCCGCACCCGTCTCCTCCTCTGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|31355001|gb|CD439358.1|CD439358
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGCACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211424445|gb|FL201051.1|FL201051
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|31355164|gb|CD439521.1|CD439521
EST:     GCCGCCTCACCCGTCTCCTCCTCCCCTTCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211427059|gb|FL201072.1|FL201072
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|61236504|gb|DN586255.1|DN586255
EST:     GCCGCCGCACCCGTCTCCTCCTCTGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|31355423|gb|CD439780.1|CD439780
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211427052|gb|FL201065.1|FL201065
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211429642|gb|FL201079.1|FL201079
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211424446|gb|FL201052.1|FL201052
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211427055|gb|FL201068.1|FL201068
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|6626373|gb|AW257905.1|AW257905
EST:     GCCGCCTCACCCGGCTCCTCCTCCGCAGCTTCCCCGNGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTGCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211427057|gb|FL201070.1|FL201070
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211429638|gb|FL201075.1|FL201075
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|5555401|gb|AI881352.1|AI881352
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211427047|gb|FL201060.1|FL201060
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211424450|gb|FL201056.1|FL201056
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211427053|gb|FL201066.1|FL201066
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211427056|gb|FL201069.1|FL201069
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATNGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|18161887|gb|BM331726.1|BM331726
EST:     ATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: ATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211427046|gb|FL201059.1|FL201059
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|31350034|gb|CD434391.1|CD434391
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211429636|gb|FL201073.1|FL201073
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|108824160|gb|EC278168.1|EC278168
EST:     GCCGCCGCACCCGTCTCCTCCTCTGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|71448354|gb|DR829404.1|DR829404
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211429640|gb|FL201077.1|FL201077
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211427048|gb|FL201061.1|FL201061
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211429641|gb|FL201078.1|FL201078
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|111991033|gb|EE331916.1|EE331916
EST:     GCCGCCGCACCCGTCTCCTCCTCTGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211424449|gb|FL201055.1|FL201055
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|31354458|gb|CD438815.1|CD438815
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211427054|gb|FL201067.1|FL201067
EST:     CGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGGCGAATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: CGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCC-GCG-ATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211427051|gb|FL201064.1|FL201064
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|31910184|gb|CD651297.1|CD651297
EST:     ACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: ACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211429637|gb|FL201074.1|FL201074
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211424448|gb|FL201054.1|FL201054
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
EST: gi|211427049|gb|FL201062.1|FL201062
EST:     GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATG                         GAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC
genomic: GCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 191

GAAAGGAGAAGAGACTTGATGTCCTCGCAGTTTGTCCAATAGATCTCCTCGCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTCGAGAAGCAGATGAGGCTGGCCGGAGATGTCGCCGGCACTCGGAAGGCCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 177

GAAAGGAGAAGAGACTTGATGTCCTCGCAGTTTGTCCAATAGATCTCCTCGCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTCGAGAAGCAGATGAGGCTGGCCGGAGATGTCGCCGGCACTCGGAAGGCCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 138

GAAAGGAGAAGAGACTTGATGTCCTCGCAGTTTGTCCAATAGATCTCCTCGCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTCGAGAAGCAGATGAGGCTGGCCGGAGATGTCGCCGGCACTCGGAAGGCCG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 133

GAAAGGAGAAGAGACTTGATGTCCTCGCAGTTTGTCCAATAGATCTCCTCGCCGCCTCACCCGTCTCCTCCTCCGCAGCTTCCCCGCGATCCCGACCATGgtgagcttcc ... atgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTCGAGAAGCAGATGAGGCTGGCCGGAGATGTCGCCGGCACTCGGAAGGCCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgatttatcttctacctcgcgagtctgaccctgcgcttgatggatgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTCGAGAAGCAGATGAGGCTGGCCGGAGATGTCGCCGGCACTCGGAAGGCCG
     tttatctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcttccccgccggcctcctctgccacctgtatctcgtccgtccgcgctccaccccgcttcgtagtgtttgggccggacgcgcgctccccgcctagggtttcaatctcgcgctgatttatcttctacctcgcgagtctgaccctgcgcttgatggatgagtgcagGAGGGCGACGGTACCAACCTTGATGCGGCGATAGAGTCGCTCCTGAATGTCGAGAAGCAGATGAGGCTGGCCGGAGATGTCGCCGGCACTCGGAAGGCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
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