1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgaggatatcccgccttctcctgcttctcctttcgctcagtaacagcagtacagcacgcgagcgatcctgttgctgatttgtgggctctggtcggattggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGGGGGCTTGGAGATGGAGATGGAGATGGCGCTGGGGCTCGGGGACGCGAC
species | Zea mays |
transcript | GRMZM2G014066_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|50331866|gb|CO526992.1|CO526992
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|71305275|gb|DR788771.1|DR788771
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|37422702|gb|CF649066.1|CF649066
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATEST: gi|149104466|gb|EE289912.2|EE289912
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGAT
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|71422365|gb|DR805702.1|DR805702
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|149086120|gb|EE175660.2|EE175660
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|94472198|gb|EB701156.1|EB701156
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|211484731|gb|FL156865.1|FL156865
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|148958296|gb|EC904516.2|EC904516
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|211484733|gb|FL156867.1|FL156867
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CTGGCCGCCGCCAAGCGTTACTACGCGGNCGCA-CTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|148990777|gb|EE032191.2|EE032191
genomic: CTGGCCGCCGCCAAGCGTTACTACGCGG-CGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|89250646|gb|DY622432.1|DY622432
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|148963488|gb|EE014508.2|EE014508
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|71427572|gb|DR808622.1|DR808622
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|88752258|gb|DY536399.1|DY536399
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGGCACGTCGACG ATGTGCCCGGGATAGG-ACGGAGGAEST: gi|211484736|gb|FL156870.1|FL156870
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGA
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGARGTGGAGATGGAGATTGAGGACGAEST: gi|71317707|gb|DR795613.1|DR795613
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGA
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|211484735|gb|FL156869.1|FL156869
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|89247987|gb|DY619773.1|DY619773
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|149108982|gb|EE293079.2|EE293079
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGEST: gi|76936894|gb|DV174950.1|DV174950
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
EST: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACG ATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
genomic: CCTGGCCGCCGCCAAGCGTTACTACGCGGCGCAGCTCGGCCACGTCGACGgtgaggatat ... ttggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACG
cagcacgcgagcgatcctgttgctgatttgtgggctctggtcggattggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGGGGGCTTGGAGATGGAGATGGAGATGGCGCTGGGGCTCGGGGACGCGAC
tgctgat putative branch site (score: 53)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggatatcccgccttctcctgcttctcctttcgctcagtaacagcagtacagcacgcgagcgatcctgttgctgatttgtgggctctggtcggattggttgcagATGTGCCCGGGATAGGGACGGAGGAGGTGGAGATGGAGATTGAGGACGACGGGGGCTTGGAGATGGAGATGGAGATGGCGCTGGGGCTCGGGGACGCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG