1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaaatgcaccatagatgtgcatttattttcttcccagtggtggtgttgattttgctttcttgtttacccgttcttgatatagtactgttctgtttcatagGGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATGGTCTAGTAACTGATCCCTCAAGAACCTTACGATGTCCAGTTAATTCAAG
species | Zea mays |
transcript | GRMZM2G013814_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGGAGCGGGAGAGAACCCGTCTGCACTCAGAAGCTGGTTTAATCCGGTG GGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATGEST: gi|211077182|gb|FL069428.1|FL069428
genomic: GTGGAGCGGGAGAGAACCCGTCTGCACTCAGAAGCTGGTTTAATCCGGTGgtgggaaacc ... tgtttcatagGGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATG
EST: GTKGAGCGGGAGAGAACCCGTCTKCACTCAGAAGCTGGTTTAATCCGGTG GGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATGEST: gi|211142683|gb|FL136020.1|FL136020
genomic: GTGGAGCGGGAGAGAACCCGTCTGCACTCAGAAGCTGGTTTAATCCGGTGgtgggaaacc ... tgtttcatagGGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATG
EST: GTGGAGCGGGAGAGAACCCGTCTGCACTCAGAAGCTGGTTTAATCCGGTG GGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATGEST: gi|89754448|gb|DY685223.1|DY685223
genomic: GTGGAGCGGGAGAGAACCCGTCTGCACTCAGAAGCTGGTTTAATCCGGTGgtgggaaacc ... tgtttcatagGGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATG
EST: GTGGAGCGGGAGAGAACCCGTCTGCACTCAGAAGCTGGTTTAATCCGGTG GGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATGEST: gi|211142681|gb|FL136018.1|FL136018
genomic: GTGGAGCGGGAGAGAACCCGTCTGCACTCAGAAGCTGGTTTAATCCGGTGgtgggaaacc ... tgtttcatagGGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATG
EST: GTGGAGCGGGAGAGAACCCGTCTGCACTCAGAAGCTGGTTTAATCCGGTG GGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATGEST: gi|88746410|gb|DY530551.1|DY530551
genomic: GTGGAGCGGGAGAGAACCCGTCTGCACTCAGAAGCTGGTTTAATCCGGTGgtgggaaacc ... tgtttcatagGGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATG
EST: GTGGAGCGGGAGAGAACCCGTCTGCACTCAAAAGCTGGTTTAATCCGGGG GGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCGTGEST: gi|211473512|gb|FL363745.1|FL363745
genomic: GTGGAGCGGGAGAGAACCCGTCTGCACTCAGAAGCTGGTTTAATCCGGTGgtgggaaacc ... tgtttcatagGGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATG
EST: GTGGAGCGGGAGAGAACCCGTCTGCACTCAGAGGCTGGTTTAATCCGGTG GGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATGEST: gi|211142682|gb|FL136019.1|FL136019
genomic: GTGGAGCGGGAGAGAACCCGTCTGCACTCAGAAGCTGGTTTAATCCGGTGgtgggaaacc ... tgtttcatagGGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATG
EST: GTGGAGCGGGAGAGAACCCGTCTGCACTCAGAAGCTGGTTTAATCCGGTG GGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATG
genomic: GTGGAGCGGGAGAGAACCCGTCTGCACTCAGAAGCTGGTTTAATCCGGTGgtgggaaacc ... tgtttcatagGGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATG
ttgattttgctttcttgtttacccgttcttgatatagtactgttctgtttcatagGGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATGGTCTAGTAACTGATCCCTCAAGAACCTTACGATGTCCAGTTAATTCAAG
tcttgat putative branch site (score: 100)
ttctgtttc putative PPT
ttgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaatgcaccatagatgtgcatttattttcttcccagtggtggtgttgattttgctttcttgtttacccgttcttgatatagtactgttctgtttcatagGGAGCACAAGTCGTGTCTAAAATATTCAGATTGCTAAGATGTTGGGTCATGGTCTAGTAACTGATCCCTCAAGAACCTTACGATGTCCAGTTAATTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- aatgcac
- - - - - - - - gtgcatt
- - - - - - - - - - - - - - - - - - - - - -tgttgat