1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggttcttctgatcactcaaatgtctatttttatgtatacactaagtttcacatggttgtatcattggatttatgatcttactgttccttttgttatacagCTATGAGGATGAGCCTCCAGAACCTGAGATTGAG
species | Zea mays |
transcript | GRMZM2G013600_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCGCGGGCGGA--SATGGC-GACGACGATTACAACGAAATCGACATGGG CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGEST: gi|211132182|gb|FL066419.1|FL066419
genomic: CGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATCGACATGGGgttcgactct ... tgttatacagCTATGAGGATGAGCCTCCAGAACCTGAGATTGAG
EST: CGCGCGGGCGGA--SATGGCGGACGACGATTACAACGAAATCGACATGGG CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGEST: gi|211133098|gb|FL066420.1|FL066420
genomic: CGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATCGACATGGGgttcgactct ... tgttatacagCTATGAGGATGAGCCTCCAGAACCTGAGATTGAG
EST: CGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATCGACATGGG CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGEST: gi|211131249|gb|FL066401.1|FL066401
genomic: CGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATCGACATGGGgttcgactct ... tgttatacagCTATGAGGATGAGCCTCCAGAACCTGAGATTGAG
EST: CGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATCGACATGGG CTATGAGGATGAGCCTCCAGAACCTGAGATTGAGEST: gi|211133102|gb|FL066424.1|FL066424
genomic: CGCGCGGGCGGAGCCATGGCGGACGACGATTACAACGAAATCGACATGGGgttcgactct ... tgttatacagCTATGAGGATGAGCCTCCAGAACCTGAGATTGAG
EST: TGGC-GACGACGATTACAACGAAATCGACATGGG CTATGAGGATGAGCCTCCAGAACCTGAGATTGAG
genomic: TGGCGGACGACGATTACAACGAAATCGACATGGGgttcgactct ... tgttatacagCTATGAGGATGAGCCTCCAGAACCTGAGATTGAG
tttcacatggttgtatcattggatttatgatcttactgttccttttgttatacagCTATGAGGATGAGCCTCCAGAACCTGAGATTGAG
atcttac putative branch site (score: 10)
tcttactgttcctttt CT-rich tract
ttttgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttcttctgatcactcaaatgtctatttttatgtatacactaagtttcacatggttgtatcattggatttatgatcttactgttccttttgttatacagCTATGAGGATGAGCCTCCAGAACCTGAGATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG