Sequence
atgc intronic sequence ATGC exonic sequence...ttcgtccggctgctgcttcggtttggtactttgattataatttcatgatgctggcttggatctgttaactttatctgctcttgtgatatgccttttgtagAAAAGTTCCCAGAGGCAGCTCGTAAATAGTGTGTTCCCCAAGCTTGCTGTGTACAATTCTGTGGATCCTTCGGTGGCTCCATCTCTTCTCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G012319_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA05G36530.1 (Glycine max), 3'ss of exon 3
------ttcgtccggctgctgcttcggtttggtactttgattataatttcatgatgctggcttggatctgttaactttatctgctcttgtgatatgccttttgtagAAAAGTTCCCAGAGGCAGCTCGTAAATAGTGTGTTCCCCAAGCTTGCTGTGTACAATTCTGTGGATCCTTCGGTGGCTCCATCTCTTCTCATG
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taagtgcttgtggagaagtttatccacataagatccactaatgtgctttcgtg--gctggtctac-tcttatgtttttgtttttgatggtaatgtggtttc---agAAAAGTTCTCAACGGCAATTAGTGCATCATGTGTTTCCAAAGCTTGCAGTGTATAATTCTGTGGACCCTTCGTTGGCTCCCTCTCTTCTCATG
upper sequence: GRMZM2G012319_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA08G03020.1 (Glycine max), 3'ss of exon 3
----ttcgtccggctgctgcttcggtttggtactttgattataatttcatgatgctggcttggatctgttaactttatctgctcttgtgatatgccttttgtagAAAAGTTCCCAGAGGCAGCTCGTAAATAGTGTGTTCCCCAAGCTTGCTGTGTACAATTCTGTGGATCCTTCGGTGGCTCCATCTCTTCTCATG
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agtgcttgcagagaagtttatccacacaagatccagtaatgtgctttcgtggt--tggtct--attttcttatgtttttgtttttgatggtaacatggtttcagAAAAGTTCTCAACGGCAATTAGTGCATCATGTGTTTCCAAAGCTTGCAGTGTATAATTCCGTGGACCCTTCATTGGCTCCCTCTCTTCTCATG
upper sequence: GRMZM2G012319_T02 (Zea mays), 3'ss of exon 1
lower sequence: AT2G07360.1 (Arabidopsis thaliana), 3'ss of exon 3
ttcgtccggctgctgcttcggtttggtactttgattataatttcatgatgctggc--ttggatctgttaactttatctgctcttgtgatatgccttttgtagAAAAGTTCCCAGAGGCAGCTCGTAAATAGTGTGTTCCCCAAGCTTGCTGTGTACAATTCTGTGGATCCTTCGGTGGCTCCATCTCTTCTCATG
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--gtttaagtttgtgttcttatgctctgcctttatacctctcttcttctgctgaaaatagtatctgactgtttcttctgtttttcgcgagtga-----gcagAAAAGTTCTCAGAAACAACTAGTGAATCACGTGTTCCCTAAGCTTGCTGTGTACAACTCAGTTGATCCTTCTCTGGCCCCATCTCTTCTTATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatgctggcttggatctgttaactttatctgctcttgtgatatgccttttgtagAAAAGTTCCCAGAGGCAGCTCGTAAATAGTGTGTTCCCCAAGCTTGCTGTGTACAATTCTGTGGATCCTTCGGTGGCTCCATCTCTTCTCATG
tgttaac putative branch site (score: 2)
tgcctttt putative PPT
ttaactttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcgtccggctgctgcttcggtttggtactttgattataatttcatgatgctggcttggatctgttaactttatctgctcttgtgatatgccttttgtagAAAAGTTCCCAGAGGCAGCTCGTAAATAGTGTGTTCCCCAAGCTTGCTGTGTACAATTCTGTGGATCCTTCGGTGGCTCCATCTCTTCTCATG
- - - - gctgctg
- - - - - - - - - - - -tggtact
- - - - - - - - - - - - - - - - - - - - - - - gatgctg