1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttcccttcttgatgagcgcgtgtacaaaaaggacaccatattttctcaattcttgtttgttcgatgcattcttagttatttctctgtgcttcggatgtagGGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTACGGCAGG
species | Zea mays |
transcript | GRMZM2G011893_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAG GGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTACEST: gi|18964079|gb|BM660797.1|BM660797
genomic: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAGgtattatcta ... tcggatgtagGGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTAC
EST: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAG GGTATCTTGTACGCCGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTACEST: gi|19057799|gb|BM736466.1|BM736466
genomic: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAGgtattatcta ... tcggatgtagGGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTAC
EST: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAG GGTATCTTGTACGCCGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTACEST: gi|211421218|gb|FL403241.1|FL403241
genomic: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAGgtattatcta ... tcggatgtagGGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTAC
EST: CCTTSSACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAG GGTATCTTGTACGCGGGAAATGACACGCTTTTSSGAGTCCACTGGCCTCTAEST: gi|8383251|gb|BE056194.1|BE056194
genomic: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAGgtattatcta ... tcggatgtagGGTATCTTGTACGCGGGAAATGACACGCTTTTC-GAGTCCACTGGCCTCTA
EST: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAG GGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTACEST: gi|211087671|gb|FL396338.1|FL396338
genomic: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAGgtattatcta ... tcggatgtagGGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTAC
EST: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAG GGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTACEST: gi|71446780|gb|DR827830.1|DR827830
genomic: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAGgtattatcta ... tcggatgtagGGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTAC
EST: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAG GGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTACEST: gi|149102642|gb|EE287999.2|EE287999
genomic: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAGgtattatcta ... tcggatgtagGGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTAC
EST: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAG GGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTACEST: gi|78122304|gb|DV540688.1|DV540688
genomic: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAGgtattatcta ... tcggatgtagGGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTAC
EST: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAG GGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTAC
genomic: CCTTCGACCTGGTGCGCGAGTACCCTCACGACCCGGCCGCCTTCACCCAGgtattatcta ... tcggatgtagGGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTAC
tcaattcttgtttgttcgatgcattcttagttatttctctgtgcttcggatgtagGGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTACGGCAGG
tttctctgtgcttc CT-rich tract
attcttagttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcccttcttgatgagcgcgtgtacaaaaaggacaccatattttctcaattcttgtttgttcgatgcattcttagttatttctctgtgcttcggatgtagGGTATCTTGTACGCGGGAAATGACACGCTTTTCGAGTCCACTGGCCTCTACGGCAGG
- - - - ttgatga
- - - - - - - - - - - -acaaaaa
- - - - - - - - - - - - - - - -gacacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattc