1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagggttcgagttcttgtgggtcaaagtaggttcttcgggcggattcctacgcaggatcggtggaaaatgtgggatcttggcgctgattcggcaggttttacgctgcagGATTTAGGGTTTAGGAGGTGGTGGTGGTGATCGGTTTGTACCGCCAGGTGAAATGTCGGCGGCTGTGGCGTGCGCGGAGAAGGCGACCAACGACATGCTG
species | Zea mays |
transcript | GRMZM2G011315_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTTTTGTGGTTCCTGCGGGCATATCTCGCGGAGATTCGGTCAGATTTG GATTTAGGGTTTAGGAGGTGGTGGTGGTGATCGGTTTGTACCGCCAGGTGAEST: gi|78085702|gb|DV514095.1|DV514095
genomic: CTCTTTTGTGGTTCCTGCGGGCATATCTCGCGGAGATTCGGTCAGATTTGgtaagggttc ... tacgctgcagGATTTAGGGTTTAGGAGGTGGTGGTGGTGATCGGTTTGTACCGCCAGGTGA
EST: CTCTTTTGTGGTTCCTGCGGGCATATCTCGCGGAGATTCGGTCAGATTTG GATTTAGGGTTTAGGAGGTGGTGGTGGTGATCGGTTTGTACCGCCAGGTGAEST: gi|76290849|gb|DV030417.1|DV030417
genomic: CTCTTTTGTGGTTCCTGCGGGCATATCTCGCGGAGATTCGGTCAGATTTGgtaagggttc ... tacgctgcagGATTTAGGGTTTAGGAGGTGGTGGTGGTGATCGGTTTGTACCGCCAGGTGA
EST: CTCTTTTGTGGTTCCTGCGGGCATATCTCGCGGAGATTCGGTCAGATTTG GATTTAGGGTTTAGGAGGTGGTGGTGGTGATCGGTTTGTACCGCCAGGTGA
genomic: CTCTTTTGTGGTTCCTGCGGGCATATCTCGCGGAGATTCGGTCAGATTTGgtaagggttc ... tacgctgcagGATTTAGGGTTTAGGAGGTGGTGGTGGTGATCGGTTTGTACCGCCAGGTGA
ggatcggtggaaaatgtgggatcttggcgctgattcggcaggttttacgctgcagGATTTAGGGTTTAGGAGGTGGTGGTGGTGATCGGTTTGTACCGCCAGGTGAAATGTCGGCGGCTGTGGCGTGCGCGGAGAAGGCGACCAACGACATGCTG
cgctgat putative branch site (score: 165)
aaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggttcgagttcttgtgggtcaaagtaggttcttcgggcggattcctacgcaggatcggtggaaaatgtgggatcttggcgctgattcggcaggttttacgctgcagGATTTAGGGTTTAGGAGGTGGTGGTGGTGATCGGTTTGTACCGCCAGGTGAAATGTCGGCGGCTGTGGCGTGCGCGGAGAAGGCGACCAACGACATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG