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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttcccgcccgccttgatctccctcttgtcctcaatcttgctatcaccagtcacacatagatgagaatttctaccttgaattcggactcgtttcgacgaacccgcggaaaatttctaccatgcaagatcactcaccatgacactgactttcgacgggtttatttcactcccaacccaacccgcagAGGCGCGCCTGCAAGACGAACTGCTGCCTGATCCTGTTCCCGCTGGCCCTCTGCTCCGTCATCGGCGGCTTACAGATCGCCATCAACCACGCGTCGTCGC

Basic information

species Zea mays
transcript GRMZM2G011160_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011160_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g11960.1 (Oryza sativa), 3'ss of exon 1
gtgttcccgcccgccttgatctccctcttgtcctcaatcttgctatcaccagtcacacatagatgagaatttctaccttgaattcggactcgtttcgacgaacccgcggaaaatttctaccatgcaagatcactcacc-atgacactgactttcgacgggtttatttcactcccaacccaacccgcagAGGCGCGCCTGCAAGACGAACTGCTGCCTGATCCTGTTCCCGCTGGCCCTCTGCTCCGTCATCGGCGGCTTACAGATCGCCATCAACCACGCGTCGTCGC
                                                                  || || | |||    |||  |    ||||   |  |||    ||   ||| |      |||||| | ||||| |||   ||   ||| |  |   || | |                 ||||||||| ||  | ||||||||||||||| |  |||| |||||||||  ||||| ||| | |||||| ||| | |||||||||||||||  || |  |  ||
------------------------------------------------------------------gatttcccaccc---attttgctatgtttgttcataccaa--gattgtttttcttcgtcaagattagtcacccatggagctcgattttgctgttcttgtgt-----------------gcagAGGCGGGCGGGGAAGACGAACTGCTGCATCGTCCTCTTCCCGCTGCTCCTCTTCTCGGCCATCGGGGGCCTCCAGATCGCCATCAACGTCGAGATGCTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaccatgacactgactttcgacgggtttatttcactcccaacccaacccgcagAGGCGCGCCTGCAAGACGAACTGCTGCCTGATCCTGTTCCCGCTGGCCCTCTGCTCCGTCATCGGCGGCTTACAGATCGCCATCAACCACGCGTCGTCGC
          cactgac  putative branch site (score: 2)
                           tttatttca  TA-rich tract