1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttaaattttttttctcattttttcttcttaaaattaagtatcattctacttatgaatgatgttgtgctttaccactcatgcatgctgctctgttctccagGACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGCGCGTTCTACACGACG
species | Zea mays |
transcript | GRMZM2G011078_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCG GACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGCEST: gi|76280658|gb|DV020226.1|DV020226
genomic: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCGgtaagccgta ... tgttctccagGACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGC
EST: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCG GACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGCEST: gi|37418302|gb|CF646819.1|CF646819
genomic: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCGgtaagccgta ... tgttctccagGACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGC
EST: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCG GACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGCEST: gi|71440939|gb|DR821989.1|DR821989
genomic: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCGgtaagccgta ... tgttctccagGACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGC
EST: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCG GACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGCEST: gi|76282431|gb|DV021999.1|DV021999
genomic: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCGgtaagccgta ... tgttctccagGACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGC
EST: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCG GACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGCEST: gi|78092064|gb|DV520438.1|DV520438
genomic: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCGgtaagccgta ... tgttctccagGACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGC
EST: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCG GACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGCEST: gi|89760517|gb|DY688893.1|DY688893
genomic: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCGgtaagccgta ... tgttctccagGACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGC
EST: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCG GACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGCEST: gi|76913839|gb|DV165275.1|DV165275
genomic: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCGgtaagccgta ... tgttctccagGACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGC
EST: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCCCG GACCAAGCTAAGAGAGGAGGATCCACTGCTCAEST: gi|78080153|gb|DV508565.1|DV508565
genomic: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCGgtaagccgta ... tgttctccagGACCAAGCTAAGAGAGGAGGATCGACTGCTCA
EST: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCG GACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGCEST: gi|76928466|gb|DV171634.1|DV171634
genomic: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCGgtaagccgta ... tgttctccagGACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGC
EST: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCG GACCAAGCTAAGAGAGGAGGATCGAGTGCTCAGTCCGGCTACTCTGGTGGC
genomic: ACGACAACCCCTTCGAGGAGGGCGGCGCCGACGAGGTCAACCCTTTCGCGgtaagccgta ... tgttctccagGACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGC
ctacttatgaatgatgttgtgctttaccactcatgcatgctgctctgttctccagGACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGCGCGTTCTACACGACG
ctgctctgttctcc CT-rich tract
tatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaattttttttctcattttttcttcttaaaattaagtatcattctacttatgaatgatgttgtgctttaccactcatgcatgctgctctgttctccagGACCAAGCTAAGAGAGGAGGATCGACTGCTCAGTCCGGCTACTCTGGTGGCGCGTTCTACACGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG