1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtgaacctcatcttcaggtgaggcaaagagaggggagattaactctcccagcaaatttataatcctgacatggtttcttgaacttttttattgtagctagATGGAACAAGATACTGGATGAAGTACCAAGAATCAGATTGTTTTGTTCTAGAAGACTCTACTGACCACCTTCACATGCTATA
species | Zea mays |
transcript | GRMZM2G010871_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTAT CEST: gi|148972976|gb|EE024011.2|EE024011
genomic: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTATgtgagtcggc ... ttgtagctag-
EST: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTAT CEST: gi|148972976|gb|EE024011.2|EE024011
genomic: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTATgtgagtcggc ... ttgtagctag-
EST: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTAT CEST: gi|149016773|gb|EE045614.2|EE045614
genomic: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTATgtgagtcggc ... ttgtagctag-
EST: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTATCTEST: gi|149016773|gb|EE045614.2|EE045614
genomic: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTA--Tgtgagtcggc ... ttgtagcta
EST: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTATCTEST: gi|149016773|gb|EE045614.2|EE045614
genomic: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTA--Tgtgagtcggc ... ttgtagcta
EST: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTATCTEST: gi|148948713|gb|EC898631.2|EC898631
genomic: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTA--Tgtgagtcggc ... ttgtagcta
EST: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTAT CEST: gi|148948713|gb|EC898631.2|EC898631
genomic: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTATgtgagtcggc ... ttgtagctag-
EST: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTAT CEST: gi|148948713|gb|EC898631.2|EC898631
genomic: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTATgtgagtcggc ... ttgtagctag-
EST: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTAT CEST: gi|149083440|gb|EE172761.2|EE172761
genomic: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTATgtgagtcggc ... ttgtagctag-
EST: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTAT ATGGAACAAGATACTGGATGAAGTACCAAGAATCAGATTGTTTTGTTCTAGEST: gi|71447097|gb|DR828147.1|DR828147
genomic: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTATgtgagtcggc ... ttgtagctagATGGAACAAGATACTGGATGAAGTACCAAGAATCAGATTGTTTTGTTCTAG
EST: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTAT CEST: gi|71447097|gb|DR828147.1|DR828147
genomic: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTATgtgagtcggc ... ttgtagctag-
EST: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTAT CEST: gi|71447097|gb|DR828147.1|DR828147
genomic: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTATgtgagtcggc ... ttgtagctag-
EST: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTAT C
genomic: TCTTCAAGCACAGTAACTTCTCCAGCTTCGTGCGCCAGCTCAACACCTATgtgagtcggc ... ttgtagctag-
tcccagcaaatttataatcctgacatggtttcttgaacttttttattgtagctagATGGAACAAGATACTGGATGAAGTACCAAGAATCAGATTGTTTTGTTCTAGAAGACTCTACTGACCACCTTCACATGCTATA
tcctgac putative branch site (score: 2)
cttttttatt putative PPT
ttgaacttttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaacctcatcttcaggtgaggcaaagagaggggagattaactctcccagcaaatttataatcctgacatggtttcttgaacttttttattgtagctagATGGAACAAGATACTGGATGAAGTACCAAGAATCAGATTGTTTTGTTCTAGAAGACTCTACTGACCACCTTCACATGCTATA
- - - - - - - - - - - -caaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcttg