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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtggttttcccccttgcctccatagatgcatagcagtttattccgttgatctactttgtcgcgtgttgttttgatctgctggtttcgccggcagccaagatgatgtggatgacctgatggtttttcctgttgtgttctgtttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGGGGAGCGTGAGAGGATGCCCGTTCCCATCATCCGTGCCTTTGGCGTGCTA

Basic information

species Zea mays
transcript GRMZM2G010823_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010823_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g21950.1 (Oryza sativa), 3'ss of exon 1
--gtgcgtggttt---tcccccttgcctccatagatgcatagcagtttattccgttgatctactttgtcgcgtgttgttttgatctgctggtttcgccggcagccaagatgatgtggatgacctgatggtttttcctgttgtgt-tctgtttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGGGGAGCGTGAGAGGATGCCCGTTCCCATCATCCGTGCCTTTGGCGTGCTA
  | | |||||||   |  | ||  |||||    ||| || ||       |   | |||||  || ||  || | ||   || |    |||||| |      |    | ||||| ||       | || ||||    ||||| | | ||| ||  | |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||| ||||||| || ||||||||||| |||||||| ||||| 
gtgcgtgtggtttcggtttctctctcctcc-cgcatggattgctaggaggtgtttcgatctg-ttcgtgacg-gatgccgtggt----tggttttg---attgatctgttgatgggg-------ggtgcttttcgtggttgtatgtatgtatcctgtagGCTGTGGGGCGCGCAGACGCAGAGGTCGCTGCAGAACTTCGACATCGGCGGCGAGCGCGAGCGGATGCCGGTGCCCATCATCCGCGCCTTTGGGGTGCTC

upper sequence: GRMZM2G010823_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT2G47510.2 (Arabidopsis thaliana), 3'ss of exon 2
gtgcgtggttttcccccttgcctccatagatgcatagcagtttattccgttgatctactttgtcgcgtgttgttttgatctgctggtttcgccggcagccaagatgatgtggatgacctgatggtttttcctgttgtgttctgtttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGGGGAGCGTGAGAGGATGCCCGTTCCCATCATCCGTGCCTTTGGCGTGCTA
                                            ||| |  |||||  | | |  ||    ||    || | ||  | ||  ||      | |   | ||       |  |  |||||   |||||||   ||| ||    ||  ||||||| || |||||||||||||||||||||||||| || || || || ||||| ||| | ||||| |  || ||  |||| || ||||||||  | 
-------------------------------------------gttcgg--gatctgatct-ttacgcaacgtcg-aattttctcttatcctcg------agggaaacgtt-----tcacagtgttttatttgttgtg---tgtctc----agATTGTGGGGAGCCCAGACGCAGAGATCGCTGCAGAACTTCGAAATCGGTGGTGAGCGCGAGCGAATGCCTGAACCAATTGTCCGCGCTTTTGGCGTCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211322399|gb|FL223776.1|FL223776
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|148999094|gb|EE030327.2|EE030327
EST:     TTCCGCGAGGAGTGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211324568|gb|FL223785.1|FL223785
EST:     TCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211324561|gb|FL223778.1|FL223778
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211324560|gb|FL223777.1|FL223777
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|78111379|gb|DV529776.1|DV529776
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211324571|gb|FL223788.1|FL223788
EST:     GCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: GCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|149089384|gb|EE178623.2|EE178623
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|149001505|gb|EE038811.2|EE038811
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211326730|gb|FL223797.1|FL223797
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211324562|gb|FL223779.1|FL223779
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211326731|gb|FL223798.1|FL223798
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCANACNCANAGATCGCTGCANAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211324574|gb|FL223791.1|FL223791
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|148951891|gb|EC897665.2|EC897665
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211324567|gb|FL223784.1|FL223784
EST:     GCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: GCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211326738|gb|FL223805.1|FL223805
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211324563|gb|FL223780.1|FL223780
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211326725|gb|FL223792.1|FL223792
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211322396|gb|FL223773.1|FL223773
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211324570|gb|FL223787.1|FL223787
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211326735|gb|FL223802.1|FL223802
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211324573|gb|FL223790.1|FL223790
EST:     GCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: GCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211324572|gb|FL223789.1|FL223789
EST:     GCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: GCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211324564|gb|FL223781.1|FL223781
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211324569|gb|FL223786.1|FL223786
EST:     GCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: GCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211326733|gb|FL223800.1|FL223800
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|91877250|gb|EB407207.1|EB407207
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211326737|gb|FL223804.1|FL223804
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211322398|gb|FL223775.1|FL223775
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211324565|gb|FL223782.1|FL223782
EST:     GCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: GCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211326728|gb|FL223795.1|FL223795
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211326729|gb|FL223796.1|FL223796
EST:     GCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: GCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
EST: gi|211326736|gb|FL223803.1|FL223803
EST:     TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAA                         GCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG
genomic: TTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 125

CGGCCACGGTGCTACTCCGGTCGGCGCTGACCCGCCCGATCTCCACCGGCTTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGGGGAGCGTGAGAGGATGCCCGTTCCCATCATCCGTGCCTTTGGCGTGCTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 261

CGGCCACGGTGCTACTCCGGTCGGCGCTGACCCGCCCGATCTCCACCGGCTTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGGGGAGCGTGAGAGGATGCCCGTTCCCATCATCCGTGCCTTTGGCGTGCTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 144

CGGCCACGGTGCTACTCCGGTCGGCGCTGACCCGCCCGATCTCCACCGGCTTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGGGGAGCGTGAGAGGATGCCCGTTCCCATCATCCGTGCCTTTGGCGTGCTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 172

CGGCCACGGTGCTACTCCGGTCGGCGCTGACCCGCCCGATCTCCACCGGCTTCCGCGAGGAGCGCGACACCTTCGGTCCCATCCAAGTCCCCAACGACAAgtgcgtggtt ... tttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGGGGAGCGTGAGAGGATGCCCGTTCCCATCATCCGTGCCTTTGGCGTGCTA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaagatgatgtggatgacctgatggtttttcctgttgtgttctgtttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGGGGAGCGTGAGAGGATGCCCGTTCCCATCATCCGTGCCTTTGGCGTGCTA
                 acctgat  putative branch site (score: 172)
                                        ttctgtttc  putative PPT
                          ttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgtggttttcccccttgcctccatagatgcatagcagtttattccgttgatctactttgtcgcgtgttgttttgatctgctggtttcgccggcagccaagatgatgtggatgacctgatggtttttcctgttgtgttctgtttcgggcagGCTGTGGGGCGCGCAGACGCAGAGATCGCTGCAGAACTTTGACATTGGCGGGGAGCGTGAGAGGATGCCCGTTCCCATCATCCGTGCCTTTGGCGTGCTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG