1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacccagccacccagggatacctatcgtatcccctatttggttgaatccgtcggttcgttttgctgcggaccatcgatttctttcttccttggtttagCGGATGAAGAAGGGGGGGAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGAGGAGGAGCCGAGACGACAGGGAGGATGACGATGACAGACACAAGAAGAA
species | Zea mays |
transcript | GRMZM2G010754_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAG CGGAGGAAGAANNNNNNNAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGAEST: gi|60344656|gb|DN211629.1|DN211629
genomic: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAGgtacccagcc ... cttggtttagCGGATGAAGAAGGGGGGGAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGA
EST: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAG CGGATGAAGAANNNNNNNAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGAEST: gi|211200810|gb|FL232404.1|FL232404
genomic: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAGgtacccagcc ... cttggtttagCGGATGAAGAAGGGGGGGAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGA
EST: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAG CGGAGGAAGAANNNNNNNAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGAEST: gi|60339898|gb|DN206871.1|DN206871
genomic: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAGgtacccagcc ... cttggtttagCGGATGAAGAAGGGGGGGAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGA
EST: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAG CGGATGAAGAANNNNNNNAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGAEST: gi|211198269|gb|FL232397.1|FL232397
genomic: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAGgtacccagcc ... cttggtttagCGGATGAAGAAGGGGGGGAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGA
EST: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAG CGGAGGAAGAANNNNNNNAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGAEST: gi|211103961|gb|FL232383.1|FL232383
genomic: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAGgtacccagcc ... cttggtttagCGGATGAAGAAGGGGGGGAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGA
EST: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAG CGGAGGAAGAANNNNNNNAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGAEST: gi|149076084|gb|EE164661.2|EE164661
genomic: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAGgtacccagcc ... cttggtttagCGGATGAAGAAGGGGGGGAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGA
EST: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAG CGGATGAAGAANNNNNNNAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGAEST: gi|211101495|gb|FL232372.1|FL232372
genomic: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAGgtacccagcc ... cttggtttagCGGATGAAGAAGGGGGGGAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGA
EST: GGGCGGCGGCGAGGGCAAGTCC-A-AAACGCCGCTCTTCTACCTCCTCAG CGGAGGAAGAANNNNNNNAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGAEST: gi|211101493|gb|FL232370.1|FL232370
genomic: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAGgtacccagcc ... cttggtttagCGGATGAAGAAGGGGGGGAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGA
EST: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAG CGGAGGAAGAANNNNNNNAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGAEST: gi|211103965|gb|FL232387.1|FL232387
genomic: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAGgtacccagcc ... cttggtttagCGGATGAAGAAGGGGGGGAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGA
EST: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAG CGGAGGAAGAANNNNNNNAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGAEST: gi|67011144|gb|CO439893.1|CO439893
genomic: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAGgtacccagcc ... cttggtttagCGGATGAAGAAGGGGGGGAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGA
EST: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAG CGGATGAAGAANNNNNNNAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGA
genomic: GGGCGGCGGCGAGGGCAAGTCCAAGAAACGCCGCTCTTCTACCTCCTCAGgtacccagcc ... cttggtttagCGGATGAAGAAGGGGGGGAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGA
gaatccgtcggttcgttttgctgcggaccatcgatttctttcttccttggtttagCGGATGAAGAAGGGGGGGAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGAGGAGGAGCCGAGACGACAGGGAGGATGACGATGACAGACACAAGAAGAA
ccatcgatttctttct CT-rich tract
atttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacccagccacccagggatacctatcgtatcccctatttggttgaatccgtcggttcgttttgctgcggaccatcgatttctttcttccttggtttagCGGATGAAGAAGGGGGGGAACGGAAGAGGCGGGACAAGAAGGAGAGCAAGAGGAGGAGCCGAGACGACAGGGAGGATGACGATGACAGACACAAGAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG