1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcacagatggaggcagcattgtcaccaattcagcatactgacaccatatgcatctccatgccttttgctttgttccgttaattgattggtctagctgcagTGTGAAGGCTACGATCGAGAGGTACAAGAAGGCACACGCCGTTGGCTCTTCCTCTGGCCCCCCACTCTTAGAGCACAATGCCCAG
species | Zea mays |
transcript | GRMZM2G010669_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGTCGTCTTCTCCAGCCGCGGACGCCTCTACGAGTACGCCAACAACAG TGTGAAGGCTACGATCGAGAGGTACAAGAAGGCACACGCCGTTGGCTCTTCEST: gi|211445857|gb|FK947214.1|FK947214
genomic: CTCGTCGTCTTCTCCAGCCGCGGACGCCTCTACGAGTACGCCAACAACAGgtgcgtgcac ... ctagctgcagTGTGAAGGCTACGATCGAGAGGTACAAGAAGGCACACGCCGTTGGCTCTTC
EST: CTCGTCGTCTTCTCCAGCCGCGGACGCCTCTACGAGTACGCCAACAACAG TGTGAAGGCTACGATCGAGAGGTACAAGAAGGCACACGCCGTTGGCTCTTCEST: gi|211445862|gb|FK947219.1|FK947219
genomic: CTCGTCGTCTTCTCCAGCCGCGGACGCCTCTACGAGTACGCCAACAACAGgtgcgtgcac ... ctagctgcagTGTGAAGGCTACGATCGAGAGGTACAAGAAGGCACACGCCGTTGGCTCTTC
EST: CTCGTCGTCTTCTCCAGCCGCGGACGCCTCTACGAGTACGCCAACAACAG TGTGAAGGCTACGATCGAGAGGTACAAGAAGGCACACGCCGTTGGCTCTTCEST: gi|211445859|gb|FK947216.1|FK947216
genomic: CTCGTCGTCTTCTCCAGCCGCGGACGCCTCTACGAGTACGCCAACAACAGgtgcgtgcac ... ctagctgcagTGTGAAGGCTACGATCGAGAGGTACAAGAAGGCACACGCCGTTGGCTCTTC
EST: CTCGTCGTCTTCTCCAGCCGCGGACGCCTCTACGAGTACGCCAACAACAG TGTGAAGGCTACGATCGAGAGGTACAAGAAGGCACACGCCGTTGGCTCTTCEST: gi|211445865|gb|FK947222.1|FK947222
genomic: CTCGTCGTCTTCTCCAGCCGCGGACGCCTCTACGAGTACGCCAACAACAGgtgcgtgcac ... ctagctgcagTGTGAAGGCTACGATCGAGAGGTACAAGAAGGCACACGCCGTTGGCTCTTC
EST: CTCGTCGTCTTCTCCAGCCGCGGACGCCTCTACGAGTACGCCAACAACAG TGTGAAGGCTACGATCGAGAGGTACAAGAAGGCACACGCCGTTGGCTCTTCEST: gi|211445858|gb|FK947215.1|FK947215
genomic: CTCGTCGTCTTCTCCAGCCGCGGACGCCTCTACGAGTACGCCAACAACAGgtgcgtgcac ... ctagctgcagTGTGAAGGCTACGATCGAGAGGTACAAGAAGGCACACGCCGTTGGCTCTTC
EST: CTCGTCGTCTTCTCCAGCCGCGGACGCCTCTACGAGTACTCCAACAACAG TGTGAAGGCTACGATCGAGAGGTACAAGAAGGCACACGCCGTTGGCTCTTC
genomic: CTCGTCGTCTTCTCCAGCCGCGGACGCCTCTACGAGTACGCCAACAACAGgtgcgtgcac ... ctagctgcagTGTGAAGGCTACGATCGAGAGGTACAAGAAGGCACACGCCGTTGGCTCTTC
atatgcatctccatgccttttgctttgttccgttaattgattggtctagctgcagTGTGAAGGCTACGATCGAGAGGTACAAGAAGGCACACGCCGTTGGCTCTTCCTCTGGCCCCCCACTCTTAGAGCACAATGCCCAG
aattgat putative branch site (score: 90)
ttaattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacagatggaggcagcattgtcaccaattcagcatactgacaccatatgcatctccatgccttttgctttgttccgttaattgattggtctagctgcagTGTGAAGGCTACGATCGAGAGGTACAAGAAGGCACACGCCGTTGGCTCTTCCTCTGGCCCCCCACTCTTAGAGCACAATGCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
gcacaga
- - - - - - gcagcat
- - - - - - - - - - gtcacca
- - - - - - - - - - - - - - - - -catactg
- - - - - - - - - - - - - - - - - - - - - - - -atgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgattg