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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgaatttattcggtcggttgatgcgtgttggttgtgctgaacttgtgctgattcgcgcttaactggtctgttggttgaatggcagCTCAGGTGACGTCGATGGAGCCCGCGGTGGCTACAGCGGGTGAAGGGCAGCGGTTCAAGCGGATTCCGCGGCAGGCGTGGTCGGGGAACCTCGAACTGGG

Basic information

species Zea mays
transcript GRMZM2G010657_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88756923|gb|DY541064.1|DY541064
EST:     CCGCGCGCGCGAGATCCTGAGCTCCGGGTTGGAGAGCTCCCGTGCTCCAG                         CTCAGGTGACGTCGATGGAGCCCGCGGTGGCTACAGCGGGTGAAGGGCAGC
genomic: CCGCGCGCGCGAGATCCTGAGCTCCGGGTTGGAGAGCTCCCGTGCTCCAGgtgtgaattt ... tgaatggcagCTCAGGTGACGTCGATGGAGCCCGCGGTGGCTACAGCGGGTGAAGGGCAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtgctgaacttgtgctgattcgcgcttaactggtctgttggttgaatggcagCTCAGGTGACGTCGATGGAGCCCGCGGTGGCTACAGCGGGTGAAGGGCAGCGGTTCAAGCGGATTCCGCGGCAGGCGTGGTCGGGGAACCTCGAACTGGG
                          gcttaac  putative branch site (score: 3)