Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctagacgaaattgtaaaaaggaaacataaggtcagcatgttcatttgcactgatgcacatgcatgatggatactggtattgtttttccatgctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATCAAGCTGGAAGGGGGTGCCCCATCGAGGATCACTGCAGCCAAGGCTATTG

Basic information

species Zea mays
transcript GRMZM2G010596_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010596_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g12560.1 (Oryza sativa), 3'ss of exon 1
ctagacgaaattgtaaaaaggaaacataaggtcagcatgttcatttgcactgatgcacatgcatgatggatactggtattgtttttccatgctcttt--tagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATCAAGCTGGAAGGGGGTGCCCCATCGAGGATCACTGCAGCCAAGGCTATTG
  |||  |  |||  |||        ||||     ||  |  ||    |   || || |||    || || | |    | || | | | |  |   |  ||||||||||| || || |||||||| || || |||||||||||||| || |||||||||||||| ||||| || ||||| |||| ||| || ||||||||||
-aagatcagcttgccaaatactttt-taagtatttcacatgtatgcatatgcatacatatgagacattgagattttcgtggtgtatgctttattcgtaatagGCTGTTGACTCTGCGGTGAGGGTGCTAAAAGAAGGTGGAATGGACGCAATCAAGCTGGAAGGAGGTGCACCCTCGAGAATCAGTGCGGCTAAGGCTATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50330325|gb|CO525451.1|CO525451
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|211519124|gb|FL084675.1|FL084675
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCG
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCG
EST: gi|76925029|gb|DV170255.1|DV170255
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|50331355|gb|CO526481.1|CO526481
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|50326634|gb|CO521760.1|CO521760
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|71311050|gb|DR791837.1|DR791837
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|26559302|gb|CA831537.1|CA831537
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|148971954|gb|EE022743.2|EE022743
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|148986222|gb|EE029970.2|EE029970
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|22542195|gb|BU092633.1|BU092633
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|101402499|gb|EB822808.1|EB822808
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|78114103|gb|DV532492.1|DV532492
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|26559395|gb|CA831630.1|CA831630
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|74234160|gb|DT642074.1|DT642074
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|78092454|gb|DV520828.1|DV520828
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|71432258|gb|DR813308.1|DR813308
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|148963379|gb|EE014384.2|EE014384
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|33467507|gb|CF244556.1|CF244556
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|50326185|gb|CO521311.1|CO521311
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|71307816|gb|DR790129.1|DR790129
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|37417798|gb|CF646559.1|CF646559
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|148981405|gb|EE027629.2|EE027629
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|74245889|gb|DT653803.1|DT653803
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAA                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|71434026|gb|DR815076.1|DR815076
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|149100427|gb|EE186502.2|EE186502
EST:     CCTCGTCGGGGATCTCCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: CCTCGTCGGGGATCTCCC-ATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|76010637|gb|DT937807.1|DT937807
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|211519127|gb|FL084678.1|FL084678
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|149096806|gb|EE182592.2|EE182592
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|71766837|gb|DR964774.1|DR964774
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|76291247|gb|DV030815.1|DV030815
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|211519126|gb|FL084677.1|FL084677
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|71431855|gb|DR812905.1|DR812905
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|22546513|gb|BU098824.1|BU098824
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|71447311|gb|DR828361.1|DR828361
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|76929700|gb|DV172121.1|DV172121
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|91051986|gb|EB162404.1|EB162404
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|89756924|gb|DY686746.1|DY686746
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGG
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGG
EST: gi|91049383|gb|EB159801.1|EB159801
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
EST: gi|149112326|gb|EE295217.2|EE295217
EST:     TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAG                         GCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC
genomic: TCCTCGTCGGGGATCTCCCATTCGGCTGCTACGAGTCCTCCGCCGCCCAGgtactcctcc ... gctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcactgatgcacatgcatgatggatactggtattgtttttccatgctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATCAAGCTGGAAGGGGGTGCCCCATCGAGGATCACTGCAGCCAAGGCTATTG
  cactgat  putative branch site (score: 3)
                                    tttttccatgctcttt  putative PPT
                               tattgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctagacgaaattgtaaaaaggaaacataaggtcagcatgttcatttgcactgatgcacatgcatgatggatactggtattgtttttccatgctcttttagGCTGTTGATTCAGCCGTGAGGGTCCTCAAGGAAGGTGGAATGGATGCGATCAAGCTGGAAGGGGGTGCCCCATCGAGGATCACTGCAGCCAAGGCTATTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG