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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagaacttccttgtaccgagtggcaaatgttttgagtctttaagatgactaattttcttattttcctcttggcctttttcacatatcaaatgcagggcagAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCGTTTTATAGCTTCAAGACAAACACATACAAACTGAACTTTACGGAGAGCCCTTC

Basic information

species Zea mays
transcript GRMZM2G010146_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010146_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g33020.1 (Oryza sativa), 3'ss of exon 1
----tagaacttccttgtaccgagtggcaaatgttttgagtct---ttaagatgactaattttcttattttcctcttggcctttttcacatatcaa-atgcagggcagAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCGTTTTATAGCTTCAAGACAAACACATACAAACTGAACTTTACGGAGAGCCCTTC
     |  |  |  ||   |    ||   |||    ||| |||   || || | |  ||| || | | | | ||| ||  |  | |  || ||||  |||||| ||||||||||| |||||||| |||||||||||||| ||||| ||||| || ||||| |||||||||||||||||||||||| |||||||    ||||||     
tgcccacgagattgttac-cattttgatgaattaggtgaatctaaattgagcttaa-aatgttatcagtgttctcatgatcactct-gcacatcactatgcagAGCAGAAAAGGGGAATCTTGGGGTGCCACTACTGCCGGGCCAGGGTTGCTCATTTTACAGCTTCAAGACAAACACATACAAATTGAACTTCCTAGAGAGC-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71425314|gb|DR806606.1|DR806606
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71425314|gb|DR806606.1|DR806606
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71425314|gb|DR806606.1|DR806606
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71425314|gb|DR806606.1|DR806606
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71302504|gb|DR787370.1|DR787370
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71302504|gb|DR787370.1|DR787370
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71302504|gb|DR787370.1|DR787370
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71302504|gb|DR787370.1|DR787370
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|93284352|gb|EB676616.1|EB676616
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|93284352|gb|EB676616.1|EB676616
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|93284352|gb|EB676616.1|EB676616
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|93284352|gb|EB676616.1|EB676616
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|91872814|gb|EB402771.1|EB402771
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|91872814|gb|EB402771.1|EB402771
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|91872814|gb|EB402771.1|EB402771
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|91872814|gb|EB402771.1|EB402771
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|78083968|gb|DV512361.1|DV512361
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|78083968|gb|DV512361.1|DV512361
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|78083968|gb|DV512361.1|DV512361
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|78083968|gb|DV512361.1|DV512361
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|94477699|gb|EB706657.1|EB706657
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         AAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCGTTTT
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcagAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCGTTTT
EST: gi|76292672|gb|DV032240.1|DV032240
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|76292672|gb|DV032240.1|DV032240
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|76292672|gb|DV032240.1|DV032240
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|76292672|gb|DV032240.1|DV032240
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|148930227|gb|EC872669.2|EC872669
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|148930227|gb|EC872669.2|EC872669
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|148930227|gb|EC872669.2|EC872669
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|148930227|gb|EC872669.2|EC872669
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|78118287|gb|DV536673.1|DV536673
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|78118287|gb|DV536673.1|DV536673
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|78118287|gb|DV536673.1|DV536673
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|78118287|gb|DV536673.1|DV536673
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71436637|gb|DR817687.1|DR817687
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71436637|gb|DR817687.1|DR817687
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71436637|gb|DR817687.1|DR817687
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71436637|gb|DR817687.1|DR817687
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|101393644|gb|EB818754.1|EB818754
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|101393644|gb|EB818754.1|EB818754
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|101393644|gb|EB818754.1|EB818754
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|101393644|gb|EB818754.1|EB818754
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|74238223|gb|DT646137.1|DT646137
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|74238223|gb|DT646137.1|DT646137
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|74238223|gb|DT646137.1|DT646137
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|74238223|gb|DT646137.1|DT646137
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|148932965|gb|EE285816.2|EE285816
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|148932965|gb|EE285816.2|EE285816
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|148932965|gb|EE285816.2|EE285816
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|148932965|gb|EE285816.2|EE285816
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|211038846|gb|FL245342.1|FL245342
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|211038846|gb|FL245342.1|FL245342
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|211038846|gb|FL245342.1|FL245342
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|211038846|gb|FL245342.1|FL245342
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71434336|gb|DR815386.1|DR815386
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71434336|gb|DR815386.1|DR815386
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71434336|gb|DR815386.1|DR815386
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71434336|gb|DR815386.1|DR815386
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71436489|gb|DR817539.1|DR817539
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71436489|gb|DR817539.1|DR817539
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71436489|gb|DR817539.1|DR817539
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|71436489|gb|DR817539.1|DR817539
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|76930392|gb|DV172364.1|DV172364
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|76930392|gb|DV172364.1|DV172364
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|76930392|gb|DV172364.1|DV172364
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|76930392|gb|DV172364.1|DV172364
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|76918988|gb|DV167546.1|DV167546
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|76918988|gb|DV167546.1|DV167546
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|76918988|gb|DV167546.1|DV167546
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|76918988|gb|DV167546.1|DV167546
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|14243987|gb|BG841705.2|BG841705
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACGGC                       
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCA---Cgtacgtccta ... tgcagggc
EST: gi|14243987|gb|BG841705.2|BG841705
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACGGC                       
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCA---Cgtacgtccta ... tgcagggc
EST: gi|14243987|gb|BG841705.2|BG841705
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACGGC                       
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCA---Cgtacgtccta ... tgcagggc
EST: gi|148944695|gb|EC889832.2|EC889832
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|148944695|gb|EC889832.2|EC889832
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|148944695|gb|EC889832.2|EC889832
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-
EST: gi|148944695|gb|EC889832.2|EC889832
EST:     GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCAC                         G
genomic: GGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcag-

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 19 (upstream exon), 31 (downstream exon)
Score: 1

ACCGCCCCCTCCGCACGCTCGACCCCACCCAGGATCACAAGCTCATGTTCGGGCTCCTCTTCTCCCTTCGCTCCTTCACCGCCAAGATCGACCCAACCACgtacgtccta ... tgcagggcagAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCGTTTTATAGCTTCAAGACAAACACATACAAACTGAACTTTACGGAGAGCCCTTC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgactaattttcttattttcctcttggcctttttcacatatcaaatgcagggcagAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCGTTTTATAGCTTCAAGACAAACACATACAAACTGAACTTTACGGAGAGCCCTTC
 gactaat  putative branch site (score: 1)
     aattttcttatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tagaacttccttgtaccgagtggcaaatgttttgagtctttaagatgactaattttcttattttcctcttggcctttttcacatatcaaatgcagggcagAAAAGGGAAATCTTGGTGTGCCACTACTGCCAGGCCAAGGTTGTTCGTTTTATAGCTTCAAGACAAACACATACAAACTGAACTTTACGGAGAGCCCTTC

- - - - - - - - - - - - - -tgttttg