Sequence
atgc intronic sequence ATGC exonic sequencegtaacaccatgttattttgttttcataatagtaacatattttactacataatttatatgaatgcttattgacagtttttttgatatttacatagGAAAAATGGTTCTACTTGATAAATTGCTGCCCAAGCTAAAGGAGCGTGATTCCAGAGTCCTTATTTTTTCACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G010085_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 3'ss of exon 9
gtaacaccatgttattttgttttcataatagtaacatattttactacataatttatatgaatgcttat-tgacagtttttttgatatttacatagGAAAAATGGTTCTACTTGATAAATTGCTGCCCAAGCTAAAGGAGCGTGATTCCAGAGTCCTTATTTTTTCACAG
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-----gtactattcatccactctagtatttgt--cataatttggtactatttctgcaatactgcacatatgatcatgcactct-tattt-tacagGAAAAATGGTTCTGTTAGATAAATTACTTCCCAAGCTAAAGGAACGTGATTCCAGAGTACTTATTTTCTCACAG
upper sequence: GRMZM2G010085_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g27040.1 (Oryza sativa), 3'ss of exon 9
gtaacaccatgttattttgttttcataatagtaacatattttactacataatttata--tgaatgctta-ttgacagtttttttgatatttacatagGAAAAATGGTTCTACTTGATAAATTGCTGCCCAAGCTAAAGGAGCGTGATTCCAGAGTCCTTATTTTTTCACAG
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-----------gtatgttcatgtcacaatttccat-tgtactgttgccaaaggtacagttcaatatttaaccttccctcctcacaatatctg--tagGAAAAATGGTTCTGTTAGATAAATTGCTGCCCAAACTGAAGGATCGTGATTCTAGGGTGCTCATTTTCTCACAG
upper sequence: GRMZM2G010085_T01 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA07G38050.2 (Glycine max), 3'ss of exon 9
gtaacaccatgttattttgttttcataatagt---aacatattttactacataatttatatgaatgcttattg-acagtttttttg-------atattta---catagGAAAAATGGTTCTACTTGATAAATTGCTGCCCAAGCTAAAGGAGCGTGATTCCAGAGTCCTTATTTTTTCACAG
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gtaa----actttatttacatttaagagtacttcaaaagtcctttttaggctgatcaattagatctgtgattatatcatttttctacttaaaaatatctcatttgcagGTAAAATGGTTCTACTGGATAAGTTACTTCCTAAACTAAAAGAACGTGATTCTAGGGTCCTTATATTTTCACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttactacataatttatatgaatgcttattgacagtttttttgatatttacatagGAAAAATGGTTCTACTTGATAAATTGCTGCCCAAGCTAAAGGAGCGTGATTCCAGAGTCCTTATTTTTTCACAG
ataatttatatgaatg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacaccatgttattttgttttcataatagtaacatattttactacataatttatatgaatgcttattgacagtttttttgatatttacatagGAAAAATGGTTCTACTTGATAAATTGCTGCCCAAGCTAAAGGAGCGTGATTCCAGAGTCCTTATTTTTTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG