1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcattatgctctgtgtaatttgtgagtagtaaagtatatatttgtgttatatacacttgatatcatgttctataataaccttttgcttctgtaaatacagGTAACGTCACCAGGTGGTAACACTGTGCACACATTGAAGGGAAAATCTGGTGACAAATTTGAGTTTAAAGCTCCGAAGGGTGGCATGTACAAGTTCTGCT
species | Zea mays |
transcript | GRMZM2G009895_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGACCACGACATCTTCTGGAGCTCCGATCACCCAGGCATCGACCTCACG GTAACGTCACCAGGTGGTAACACTEST: gi|78120713|gb|DV539097.1|DV539097
genomic: TCGACCACGACATCTTCTGGAGCTCCGATCACCCAGGCATCGACCTCACGgtacacaccc ... gtaaatacagGTAACGTCACCAGGTGGTAACACT
EST: TCGACCACGACATCTTCTGGAGCTCCGATCACCCAGGCATCGACCTCACG GTAACGTCACCAGGTGGTAACACTGTGCACACATTGAAGGGAAAATCTGGTEST: gi|211072074|gb|FK966520.1|FK966520
genomic: TCGACCACGACATCTTCTGGAGCTCCGATCACCCAGGCATCGACCTCACGgtacacaccc ... gtaaatacagGTAACGTCACCAGGTGGTAACACTGTGCACACATTGAAGGGAAAATCTGGT
EST: TCGACCACGACATCTTCTGGAGCTCCGATCACCCAGGCATCGACCTCACG GTAACGTCACCAGGTGGTAACACTGTGCACACATTGAAGGGAAAATCTGGT
genomic: TCGACCACGACATCTTCTGGAGCTCCGATCACCCAGGCATCGACCTCACGgtacacaccc ... gtaaatacagGTAACGTCACCAGGTGGTAACACTGTGCACACATTGAAGGGAAAATCTGGT
gttatatacacttgatatcatgttctataataaccttttgcttctgtaaatacagGTAACGTCACCAGGTGGTAACACTGTGCACACATTGAAGGGAAAATCTGGTGACAAATTTGAGTTTAAAGCTCCGAAGGGTGGCATGTACAAGTTCTGCT
taataac putative branch site (score: 241)
ccttttgcttctgt CT-rich tract
atgttctataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattatgctctgtgtaatttgtgagtagtaaagtatatatttgtgttatatacacttgatatcatgttctataataaccttttgcttctgtaaatacagGTAACGTCACCAGGTGGTAACACTGTGCACACATTGAAGGGAAAATCTGGTGACAAATTTGAGTTTAAAGCTCCGAAGGGTGGCATGTACAAGTTCTGCT
- - tatgctc
- - - - - - - - - - - - - - - - - - - - -ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttc