Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggcgcccccttgctcgctctttctggctccgatctgatccgccttcttggttagggtttggctgatggggtggtactcgatctgacgggttcggatctgattttctccttgccttcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG

Basic information

species Zea mays
transcript GRMZM2G009845_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009845_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g06350.1 (Oryza sativa), 3'ss of exon 1
gtgcggcgcccccttgctcgctctttctggctccgatctgatccgccttcttggttagggtttggctgatggggtggtactcgatctgacgggttcggatctgattttct-----cct---tgccttcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG
                   | |  |    |  ||||||||  |||  || |||||| |||          |||  ||  ||||||||| ||| | |||||||| ||||||     |||   ||  |   | ||||| | || || |||||||||||||| ||||| || || ||| |||||  | | |||||||| |||||||||||||||||| |||||||||||||||| |
-------------------gtttgtatatgtcccgatctggcccggttttttggtttggg----------gggcgggctctcgatctggcggttccggatctggttttctgaccccctgtgtgggtgtgtgtgcagTTGGAGGGGTTGCCGGCGATGGTGCAGGCGGTGCAGTCCGACGACAGCGCCGTGCAGCTGGAGGCCACCACGCAGTTCCGGAAGCTGCTCTCCATCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211002610|gb|FL253498.1|FL253498
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211005402|gb|FL253522.1|FL253522
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211008170|gb|FL253527.1|FL253527
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211376202|gb|FL253487.1|FL253487
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211222762|gb|FL228396.1|FL228396
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211224821|gb|FL228406.1|FL228406
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211002620|gb|FL253508.1|FL253508
EST:     CCGCCGGS-CCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211005393|gb|FL253513.1|FL253513
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|9952266|gb|BE638849.1|BE638849
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCG-TCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211224826|gb|FL228411.1|FL228411
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|148966362|gb|EE017351.2|EE017351
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211376204|gb|FL253489.1|FL253489
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211008169|gb|FL253526.1|FL253526
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|67031523|gb|CO460272.1|CO460272
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211010947|gb|FL253540.1|FL253540
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211002616|gb|FL253504.1|FL253504
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211005398|gb|FL253518.1|FL253518
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211224828|gb|FL228413.1|FL228413
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211220703|gb|FL228389.1|FL228389
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211376205|gb|FL253490.1|FL253490
EST:     CGCCGGCGCCGTGCCGCCGATGGGCCACTTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CGCCGGCGCCGTGCCGCCGATGGGCCACT-CCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|60345381|gb|DN212354.1|DN212354
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211008171|gb|FL253528.1|FL253528
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211008175|gb|FL253532.1|FL253532
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAAGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211376203|gb|FL253488.1|FL253488
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211010949|gb|FL253542.1|FL253542
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211002617|gb|FL253505.1|FL253505
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACGGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211002615|gb|FL253503.1|FL253503
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211010948|gb|FL253541.1|FL253541
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211002621|gb|FL253509.1|FL253509
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211005395|gb|FL253515.1|FL253515
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211005396|gb|FL253516.1|FL253516
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211224823|gb|FL228408.1|FL228408
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|74241129|gb|DT649043.1|DT649043
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211224831|gb|FL228416.1|FL228416
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCACAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211005394|gb|FL253514.1|FL253514
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211224822|gb|FL228407.1|FL228407
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211224824|gb|FL228409.1|FL228409
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211376209|gb|FL253494.1|FL253494
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAAGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211005392|gb|FL253512.1|FL253512
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211008178|gb|FL253535.1|FL253535
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211002611|gb|FL253499.1|FL253499
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211220699|gb|FL228385.1|FL228385
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211220701|gb|FL228387.1|FL228387
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211008181|gb|FL253538.1|FL253538
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|76926668|gb|DV170963.1|DV170963
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211224830|gb|FL228415.1|FL228415
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211376212|gb|FL253497.1|FL253497
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211010951|gb|FL253544.1|FL253544
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211010950|gb|FL253543.1|FL253543
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|148991022|gb|EE032463.2|EE032463
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211222761|gb|FL228395.1|FL228395
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211005397|gb|FL253517.1|FL253517
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211224829|gb|FL228414.1|FL228414
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211220697|gb|FL228383.1|FL228383
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211222770|gb|FL228404.1|FL228404
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211002613|gb|FL253501.1|FL253501
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211002614|gb|FL253502.1|FL253502
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|148994071|gb|EE033948.2|EE033948
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211222769|gb|FL228403.1|FL228403
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211220695|gb|FL228381.1|FL228381
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|211376207|gb|FL253492.1|FL253492
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGGCCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|148952930|gb|EE152401.2|EE152401
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
EST: gi|110533381|gb|EE037561.1|EE037561
EST:     CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAG                         CTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT
genomic: CCGCCGGCGCCGTGCCGCCGATGGGCCACTCCACCGCACTCCAGCAGAAGgtgcggcgcc ... tcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtactcgatctgacgggttcggatctgattttctccttgccttcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG
                          tctgattttctccttg  CT-rich tract
                            tgatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcggcgcccccttgctcgctctttctggctccgatctgatccgccttcttggttagggtttggctgatggggtggtactcgatctgacgggttcggatctgattttctccttgccttcttctgcagCTCGATGGCTTGCCGGCGATGGTACAGGCCGTTCACTCCAACGACCCCACTGTGCAGCTTGAGGCCACCACGCAGTTCAGGAAGCTGCTCTCCATAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT