1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcgtgcagtgcctgagttcacgggaaccatcgctttctttgcccgtccgactactgccaaattccgggaccccggtttcgatcacaccagtgttctaacaaacgccacatgatatctcggtcgtcgcagATCGACCCCGCCAAGTACAAGAACACCTCGTCGGCGTTCAGCGTGGTGATGAGGGAGCAGGGCCTCCGGGGCTTCTACAGGGGGTGGGCGCCGACGTTCG
species | Zea mays |
transcript | GRMZM2G009045_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCACGCACGCCGCCGTCACGCCGCTCGACGTCATCAAGTGCAATATCCAG ATCGACCCCGCCAAGTACAAGAACACCTCGTCGGCGTTCAGCGTGGTGATGEST: gi|91051907|gb|EB162325.1|EB162325
genomic: TCACGCACGCCGCCGTCACGCCGCTCGACGTCATCAAGTGCAATATCCAGgtgcgtgcag ... gtcgtcgcagATCGACCCCGCCAAGTACAAGAACACCTCGTCGGCGTTCAGCGTGGTGATG
EST: TCACGCACGCCGCCGTCACGCCGCTCGACGTCATCAAGTGCAATATCCAG ATCGACCCCGCCAAGTACAAGAACACCTCGTCGGCGTTCAGCGTGGTGATGEST: gi|13150488|gb|BG320810.1|BG320810
genomic: TCACGCACGCCGCCGTCACGCCGCTCGACGTCATCAAGTGCAATATCCAGgtgcgtgcag ... gtcgtcgcagATCGACCCCGCCAAGTACAAGAACACCTCGTCGGCGTTCAGCGTGGTGATG
EST: TCACGCACGCCGCCGTCACGCCGCTCGACGTCATCAAGTGCAATATCCAG ATCGACCCCGCCAAGTACAAGAACACCTCGTCGGCGTTCAGCGTGTGTGATEST: gi|211020550|gb|FL192315.1|FL192315
genomic: TCACGCACGCCGCCGTCACGCCGCTCGACGTCATCAAGTGCAATATCCAGgtgcgtgcag ... gtcgtcgcagATCGACCCCGCCAAGTACAAGAACACCTCGTCGGCGTTCAGCGTG-GTGAT
EST: TCACGCACGCCGCCGTCACGCCGCTCGACGTCATCAAGTGCAATATCCAG ATCGACCCCGCCAAGTACAAGAACACCTCGTCGGCGTTCAGCGTGGTGATGEST: gi|149096561|gb|EE182315.2|EE182315
genomic: TCACGCACGCCGCCGTCACGCCGCTCGACGTCATCAAGTGCAATATCCAGgtgcgtgcag ... gtcgtcgcagATCGACCCCGCCAAGTACAAGAACACCTCGTCGGCGTTCAGCGTGGTGATG
EST: TCACGCACGCCGCCGTCACGCCGCTCGACGTCATCAAGTGCAATATCCAG ATCGACCCCGCCAAGTACAAGAACACCTCGTCGGCGTTCAGCGTGGTGATGEST: gi|149104489|gb|EE289936.2|EE289936
genomic: TCACGCACGCCGCCGTCACGCCGCTCGACGTCATCAAGTGCAATATCCAGgtgcgtgcag ... gtcgtcgcagATCGACCCCGCCAAGTACAAGAACACCTCGTCGGCGTTCAGCGTGGTGATG
EST: TCACGCACGCCGCCGTCACGCCGCTCGACGTCATCAAGTGCAATATCCAG ATCGACCCCGCCAAGTACAAGAACACCTCGTCGGCGTTCAGCGTGGTGATG
genomic: TCACGCACGCCGCCGTCACGCCGCTCGACGTCATCAAGTGCAATATCCAGgtgcgtgcag ... gtcgtcgcagATCGACCCCGCCAAGTACAAGAACACCTCGTCGGCGTTCAGCGTGGTGATG
gtttcgatcacaccagtgttctaacaaacgccacatgatatctcggtcgtcgcagATCGACCCCGCCAAGTACAAGAACACCTCGTCGGCGTTCAGCGTGGTGATGAGGGAGCAGGGCCTCCGGGGCTTCTACAGGGGGTGGGCGCCGACGTTCG
ttctaac putative branch site (score: 3)
taacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtgcagtgcctgagttcacgggaaccatcgctttctttgcccgtccgactactgccaaattccgggaccccggtttcgatcacaccagtgttctaacaaacgccacatgatatctcggtcgtcgcagATCGACCCCGCCAAGTACAAGAACACCTCGTCGGCGTTCAGCGTGGTGATGAGGGAGCAGGGCCTCCGGGGCTTCTACAGGGGGTGGGCGCCGACGTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG