1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttggttataaagccaagcgaaatcgctttggaatcaagttgatgaattatggatctgatgcattctgttcatttgttgctgtgtagGCTAGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTGTTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTG
species | Zea mays |
transcript | GRMZM2G008647_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGACTTCAGAG GCTAGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|87156320|gb|DY401109.1|DY401109
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGACTTCAGAGgttggttata ... tgctgtgtagGCTAGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGACTTCAGAG GCTAGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|26559048|gb|CA831283.1|CA831283
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGACTTCAGAGgttggttata ... tgctgtgtagGCTAGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGACTTCAGAG GCTAGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|22520845|gb|BU079656.1|BU079656
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGACTTCAGAGgttggttata ... tgctgtgtagGCTAGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGACTTCAGAG GCTAGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|22520856|gb|BU079667.1|BU079667
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGACTTCAGAGgttggttata ... tgctgtgtagGCTAGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGACTTCAGAG GCTAGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTEST: gi|87156605|gb|DY401394.1|DY401394
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGACTTCAGAGgttggttata ... tgctgtgtagGCTAGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
EST: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGACTTCAGAG GCTAGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
genomic: ATGAGAAGTGTGGCACCAGCCGGGATCCAAAGGGCCACCTGACTTCAGAGgttggttata ... tgctgtgtagGCTAGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCT
aatcaagttgatgaattatggatctgatgcattctgttcatttgttgctgtgtagGCTAGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTGTTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTG
atctgat putative branch site (score: 4)
atgaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttataaagccaagcgaaatcgctttggaatcaagttgatgaattatggatctgatgcattctgttcatttgttgctgtgtagGCTAGGCTTGTGCCAAGCTTGAATCCTCTTGTGAAGGAGTTTCTCAATGCTGTTGATGACAAGCGGAAGGAAGTCCTCTCTAAAATAGAAGAGGATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG