1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgggtttcatgatctatctgttgatttcgtgctttgattttgctcatggcagcggtttctagggtttttgtcgtggagaggatttatttgtttgcgatttttgctggtatcagACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCCTATCGGAGAGGGCGCGGGAGAAGGCCGTCGAGGAG
species | Zea mays |
transcript | GRMZM2G008556_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCGGATCCCGTCAGGGTCGAGCTCACGCGCCTCGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCCEST: gi|78082127|gb|DV510539.1|DV510539
genomic: GTCGGATCCCGTCAGGGTCGAGCTCACGCGCCTCGAGAACGAGCTCAGGGgtgggtttca ... ctggtatcagACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCC
EST: GTCGGATCCCGTCAGGGTCGAGCTCACGCGCCTCGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCCEST: gi|71426785|gb|DR807835.1|DR807835
genomic: GTCGGATCCCGTCAGGGTCGAGCTCACGCGCCTCGAGAACGAGCTCAGGGgtgggtttca ... ctggtatcagACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCC
EST: GTCGGATCCCGTCAGGGTCGAGCTCACGCGCCTCGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCCEST: gi|149109119|gb|EE190019.2|EE190019
genomic: GTCGGATCCCGTCAGGGTCGAGCTCACGCGCCTCGAGAACGAGCTCAGGGgtgggtttca ... ctggtatcagACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCC
EST: GTCGGATCCCGTCAGGGTCGAGCTCACGCGCCTCGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCCEST: gi|71431941|gb|DR812991.1|DR812991
genomic: GTCGGATCCCGTCAGGGTCGAGCTCACGCGCCTCGAGAACGAGCTCAGGGgtgggtttca ... ctggtatcagACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCC
EST: GTCGGATCCCGTCAGGGTCGAGCTCACGCGCCTCGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCCEST: gi|148939307|gb|EC883818.2|EC883818
genomic: GTCGGATCCCGTCAGGGTCGAGCTCACGCGCCTCGAGAACGAGCTCAGGGgtgggtttca ... ctggtatcagACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCC
EST: TCGGATCCCGTCAGGGTCGAGCTCACGCCGCCTCGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCCEST: gi|71448531|gb|DR829581.1|DR829581
genomic: TCGGATCCCGTCAGGGTCGAGCTCACGC-GCCTCGAGAACGAGCTCAGGGgtgggtttca ... ctggtatcagACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCC
EST: GTCGGATCCCGTCAGGGTCGAGCTCACGCGCCTCGAGAACGAGCTCAGGG ACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCC
genomic: GTCGGATCCCGTCAGGGTCGAGCTCACGCGCCTCGAGAACGAGCTCAGGGgtgggtttca ... ctggtatcagACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCC
ctagggtttttgtcgtggagaggatttatttgtttgcgatttttgctggtatcagACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCCTATCGGAGAGGGCGCGGGAGAAGGCCGTCGAGGAG
tttttgct CT-rich tract
atttatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtttcatgatctatctgttgatttcgtgctttgattttgctcatggcagcggtttctagggtttttgtcgtggagaggatttatttgtttgcgatttttgctggtatcagACAAGGAGAGGGAGCTTGGGGAGGCGCAGACGGAGATACGCGCGCTGCGCCTATCGGAGAGGGCGCGGGAGAAGGCCGTCGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG