1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gcaagtgatccccgatcctccgcttctctccctccctgctctcatctctgtccggctccgggctgggtggctgaaagcctgaaacgaaaaccagatttctgacgcggctgctcctgtcgccaccgatcgcgtgctgcagGGGGTGGTGGAGTGGTGTGCGTCACCTCCGGCGGCACTACGGTGCCCCTGGAGCAGCGTTGCGTGCGCTACATCGACAATTTTAGCTCCGGCCAGCGCGG
species | Zea mays |
transcript | GRMZM2G008209_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGACCGTCTCGCCGCCAGCCTCGCCGATTTCCTCGCCCGCCACTCCGCCG GGGGTGGTGGAGTGGTGTGCGTCACCTCCGGCGGCACTACGGTGCCCCTGGEST: gi|211537797|gb|FL107886.1|FL107886
genomic: CGACCGTCTCGCCGCCAGCCTCGCCGATTTCCTCGCCCGCCACTCCGCCGgcaagtgatc ... cgtgctgcagGGGGTGGTGGAGTGGTGTGCGTCACCTCCGGCGGCACTACGGTGCCCCTGG
EST: CGACCGTCTCGCCGCCAGCCTCGCCGATTTCCTCGCCCGCCACTCAGCCG GGGGTGGTGGGAGTGGTGTEST: gi|71766356|gb|DR964293.1|DR964293
genomic: CGACCGTCTCGCCGCCAGCCTCGCCGATTTCCTCGCCCGCCACTCCGCCGgcaagtgatc ... cgtgctgcagGGGGTGGTGG-AGTGGTGT
EST: CGACCGTCTCGCCGCCAGCCTCGCCGATTTCCTCGCCCGCCACTCCGCCG GGGGTGGTGGAGTGGTGTGCGTCACCTCCGGCGGCACTACGGTGCCCCTGG
genomic: CGACCGTCTCGCCGCCAGCCTCGCCGATTTCCTCGCCCGCCACTCCGCCGgcaagtgatc ... cgtgctgcagGGGGTGGTGGAGTGGTGTGCGTCACCTCCGGCGGCACTACGGTGCCCCTGG
cgaaaaccagatttctgacgcggctgctcctgtcgccaccgatcgcgtgctgcagGGGGTGGTGGAGTGGTGTGCGTCACCTCCGGCGGCACTACGGTGCCCCTGGAGCAGCGTTGCGTGCGCTACATCGACAATTTTAGCTCCGGCCAGCGCGG
ttctgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgatccccgatcctccgcttctctccctccctgctctcatctctgtccggctccgggctgggtggctgaaagcctgaaacgaaaaccagatttctgacgcggctgctcctgtcgccaccgatcgcgtgctgcagGGGGTGGTGGAGTGGTGTGCGTCACCTCCGGCGGCACTACGGTGCCCCTGGAGCAGCGTTGCGTGCGCTACATCGACAATTTTAGCTCCGGCCAGCGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG