1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtggaaagaccatgatcaattagttatcttggctaatagacctatgctgatgtgctatatggtattgacagATATTCCGAGTGGACCCTTTCTTTAGTGGCCAGGATAATTATGATCAATTAGTGAAAATAGCTGAG
species | Zea mays |
transcript | GRMZM2G007399_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGATTACTCATTGGATTTGTGGAGTCTTGGTTGCATGTTCGCAGCAATG ATATTCCGAGTGGACCCTTTCTTTAGTGGCCAGGATAATTATGATCAATTAEST: gi|60358684|gb|DN225657.1|DN225657
genomic: ATGATTACTCATTGGATTTGTGGAGTCTTGGTTGCATGTTCGCAGCAATGgtaagtggaa ... gtattgacagATATTCCGAGTGGACCCTTTCTTTAGTGGCCAGGATAATTATGATCAATTA
EST: ATGATTACTCATTGGATTTGTGGAGTCTTGGTTGCATGTTCGCAGCAATG ATATTCCGAGTGGACCCTTTCTTTAGTGGCCAGGATAATTATGATCAATTAEST: gi|71760158|gb|DR958095.1|DR958095
genomic: ATGATTACTCATTGGATTTGTGGAGTCTTGGTTGCATGTTCGCAGCAATGgtaagtggaa ... gtattgacagATATTCCGAGTGGACCCTTTCTTTAGTGGCCAGGATAATTATGATCAATTA
EST: ATGATTACTCATTGGATTTGTGGAGTCTTGGTTGCATGTTCGCAGCAATG ATATTCCGAGTGGACCCTTTCTTTAGTGGCCAGGATAATTATGATCAATTAEST: gi|60399822|gb|DN232632.1|DN232632
genomic: ATGATTACTCATTGGATTTGTGGAGTCTTGGTTGCATGTTCGCAGCAATGgtaagtggaa ... gtattgacagATATTCCGAGTGGACCCTTTCTTTAGTGGCCAGGATAATTATGATCAATTA
EST: ATGATTACTCATAGGATTTGTGGAGTCTTGGTTGCATGTTCGCAGCAATG ATATTCCGAGTGGACCCTTTCTTTAGTGGCCAGGATAATTATGATCAATTA
genomic: ATGATTACTCATTGGATTTGTGGAGTCTTGGTTGCATGTTCGCAGCAATGgtaagtggaa ... gtattgacagATATTCCGAGTGGACCCTTTCTTTAGTGGCCAGGATAATTATGATCAATTA
caattagttatcttggctaatagacctatgctgatgtgctatatggtattgacagATATTCCGAGTGGACCCTTTCTTTAGTGGCCAGGATAATTATGATCAATTAGTGAAAATAGCTGAG
tgctgat putative branch site (score: 42)
ttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggaaagaccatgatcaattagttatcttggctaatagacctatgctgatgtgctatatggtattgacagATATTCCGAGTGGACCCTTTCTTTAGTGGCCAGGATAATTATGATCAATTAGTGAAAATAGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA