Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggcccgccggagttcccgtgcatctgtttccgctcgatttttttcctttttgcggattatttggctgactgactttgggttggtttgtggtatggtgattgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATAGTAACGTATTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCT

Basic information

species Zea mays
transcript GRMZM2G007300_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g62244.1 (Oryza sativa), 3'ss of exon 1
----------gtgcggcccgccggagttcccgtgcatctgtttccgctcgatttttttcctttttgcggattatttggctgactgactttgggtt--ggtttgtggtatggtgattgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATAGTAACGTATTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCT
           |||||| |||    || | ||| | || || | |    | ||     |||||||    ||   | |  |||  || || ||| |  |||||||||| |||||||||  ||||||||||| |||||||| ||||||||||||||||||||| | |||||||| || ||||| ||||||||||||||||| |||||||||||||| || |||||
gtgcggatccatgcggctcgcttc-gtcctcgttcgtcggtgttc---tgtttgcgccccttttttttcatccgtggattgatcgatttcggggttgggtttgtggtttggtgattggtgcagATCTCGCGAAGCACCCCGTGGATGGGTTCTCGGCTGGGTTAGTCGACGACAGCAACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCT

upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 1
lower sequence: EDP03036 (Chlamydomonas reinhardtii), 3'ss of exon 1
gtgcggcccgccggagttcccgtgcatctgtttccgctcgatttttttcctttttgcggattatttggctga-ctgactttgggttggtttgtggtatggtgattgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATAGTAACGTATTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCT
                                           |    |  ||| || |          ||| |  ||    |       | | |     ||     |||||| ||| ||| | |||| |||||||| ||||||||||| || ||||| ||||| ||||| ||||||||||||||||||||||| || || || || || ||
------------------------------------------gtgcgccggtttcgcaggcgcgacacttgagcaaaccccagacgaagctctcgcgccctgcc---cgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATTGGGCCCCCGGAGACACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14548374|gb|BI096718.1|BI096718
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|116815280|gb|EC857946.1|EC857946
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         AT-TCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211365067|gb|FL116005.1|FL116005
EST:     GGCGG---CCATCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211365064|gb|FL116002.1|FL116002
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|32858948|gb|CD998629.1|CD998629
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTT-TNCTGCTGGGCTGGTCGACGAT
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCT-CGGCTGGGCTGGTCGACGAT
EST: gi|67023819|gb|CO452568.1|CO452568
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|116825457|gb|EC869181.1|EC869181
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGACTGGGCTGGTCGACGAT
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGG-CTGGGCTGGTCGACGAT
EST: gi|211365065|gb|FL116003.1|FL116003
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211362423|gb|FL116001.1|FL116001
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211365068|gb|FL116006.1|FL116006
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|32910629|gb|CF015441.1|CF015441
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|32863732|gb|CF003414.1|CF003414
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGTAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|50334257|gb|CO529383.1|CO529383
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211530486|gb|FK952738.1|FK952738
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|32909923|gb|CF014735.1|CF014735
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTTTTTTGTTCTGGNCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211365070|gb|FL116008.1|FL116008
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|84980854|gb|DW531203.1|DW531203
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|67022558|gb|CO451307.1|CO451307
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211365074|gb|FL116012.1|FL116012
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211365076|gb|FL116014.1|FL116014
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAG
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAG
EST: gi|32913813|gb|CF018625.1|CF018625
EST:     GACGGGCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGAGGATGGTTTCTTGGCTGGGCTGGTCGACGATA
genomic: G-CGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|84980470|gb|DW530819.1|DW530819
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|60342711|gb|DN209684.1|DN209684
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|84980533|gb|DW530882.1|DW530882
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211365072|gb|FL116010.1|FL116010
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211365075|gb|FL116013.1|FL116013
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|32863930|gb|CF003612.1|CF003612
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211533492|gb|FK952752.1|FK952752
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211365077|gb|FL116015.1|FL116015
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211362422|gb|FL116000.1|FL116000
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211530488|gb|FK952740.1|FK952740
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211365073|gb|FL116011.1|FL116011
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|211365066|gb|FL116004.1|FL116004
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
EST: gi|116824917|gb|EC868582.1|EC868582
EST:     GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAG                         ATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA
genomic: GGCGGCCACCACCAGCCAGGCGAGCCTCCTCCTGCAGAAGCAGCTCAGAGgtgcggcccg ... attgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggattatttggctgactgactttgggttggtttgtggtatggtgattgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATAGTAACGTATTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCT
     tattt  TA-rich tract