1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggtgtcgtcattgcttccactcctcgcagaacaatatgctacctgaaacagctgtcacgtatgagtgatgatgcttgactcgattgctattcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTGAGAAACTGCTAGCATGGGCGCGGTGCTTGGACGGCATGACACGCACAA
species | Zea mays |
transcript | GRMZM2G006790_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTEST: gi|211172415|gb|FL359082.1|FL359082
genomic: CCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCC-AGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|211366894|gb|FL196959.1|FL196959
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTRATCGGGGGATTCTTTGCTTEST: gi|211366893|gb|FL196958.1|FL196958
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|211366887|gb|FL196952.1|FL196952
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|211366892|gb|FL196957.1|FL196957
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|74234338|gb|DT642252.1|DT642252
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|211213037|gb|FL316832.1|FL316832
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|211203216|gb|FL341877.1|FL341877
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CGCTCCCGGATTCTCTTGGCGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|211023359|gb|FL325324.1|FL325324
genomic: CGCTCCCGGATTCTCTT--TGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|211023721|gb|FL334134.1|FL334134
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|211366890|gb|FL196955.1|FL196955
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|211366882|gb|FL196947.1|FL196947
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|211411713|gb|FL322222.1|FL322222
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|211366891|gb|FL196956.1|FL196956
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|211366886|gb|FL196951.1|FL196951
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|148978865|gb|EE026354.2|EE026354
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|211162599|gb|FL365711.1|FL365711
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|211366884|gb|FL196949.1|FL196949
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGA-GAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|71428676|gb|DR809726.1|DR809726
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|76013244|gb|DT940414.1|DT940414
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTEST: gi|211366883|gb|FL196948.1|FL196948
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
EST: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAG GCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
genomic: CCCGCTCCCGGATTCTCTTTGCCGCCGCGAGGAGACGGCGTCCAGTCCAGgcaagcgctc ... tcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTT
aaacagctgtcacgtatgagtgatgatgcttgactcgattgctattcatttccagGCCTTCAGCAGCTCCGTCTCCGTGTGTATCTGATCGGGGGATTCTTTGCTTGAGAAACTGCTAGCATGGGCGCGGTGCTTGGACGGCATGACACGCACAA
gcttgac putative branch site (score: 4)
ttcatttcc putative PPT
tattcattt TA-rich tract