1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgccaaacatgtatctcagatttgttcaagcactcgatgtcttttcagacgcgcacaactgctgccacggatgagattgcagcttatttggttttggttgtttaactgatcggttttaatttctggtgtgattaattggtagGGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCTAGGTCACCGGACCATCACCATCACCAGCAGGCGGCCATGGAGGAGTTGG
species | Zea mays |
transcript | GRMZM2G006578_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAG GGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCTEST: gi|149032497|gb|EE154928.2|EE154928
genomic: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAGgtacgccaaa ... taattggtagGGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCT
EST: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAG GGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCTEST: gi|148930796|gb|EC873148.2|EC873148
genomic: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAGgtacgccaaa ... taattggtagGGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCT
EST: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAG GGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCTEST: gi|148954298|gb|EC899706.2|EC899706
genomic: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAGgtacgccaaa ... taattggtagGGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCT
EST: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAG GGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCTEST: gi|211267315|gb|FL091729.1|FL091729
genomic: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAGgtacgccaaa ... taattggtagGGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCT
EST: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAG GGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCTEST: gi|149110645|gb|EE190527.2|EE190527
genomic: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAGgtacgccaaa ... taattggtagGGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCT
EST: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAG GGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCTEST: gi|76291953|gb|DV031521.1|DV031521
genomic: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAGgtacgccaaa ... taattggtagGGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCT
EST: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAG GGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCTEST: gi|211316837|gb|FL135397.1|FL135397
genomic: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAGgtacgccaaa ... taattggtagGGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCT
EST: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAG GGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCT
genomic: CACTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCGTCGCCGAAGgtacgccaaa ... taattggtagGGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCT
ttggttttggttgtttaactgatcggttttaatttctggtgtgattaattggtagGGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCTAGGTCACCGGACCATCACCATCACCAGCAGGCGGCCATGGAGGAGTTGG
gattaat putative branch site (score: 21)
ttttaatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgccaaacatgtatctcagatttgttcaagcactcgatgtcttttcagacgcgcacaactgctgccacggatgagattgcagcttatttggttttggttgtttaactgatcggttttaatttctggtgtgattaattggtagGGGGAGATTAGTTTAGTCCTGTCCCCGGCGCCGGTGGGATCCAAGCAGCCTAGGTCACCGGACCATCACCATCACCAGCAGGCGGCCATGGAGGAGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGGCGCCG