1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttttccgtaactataggtcacacgatgattattttctccgcgacattatccgggtattaccgtgacagatatttttattggctccatttctgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAAATCGCCTGCTGCTGCGCTGGTCAACAACTCCCTGACCAGATTCGG
species | Zea mays |
transcript | GRMZM2G006468_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|37420659|gb|CF648025.1|CF648025
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG ---G-TTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|78113266|gb|DV531659.1|DV531659
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|211186704|gb|FL252849.1|FL252849
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|211316809|gb|FL363634.1|FL363634
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCC-AA--A- TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|116816167|gb|EC858873.1|EC858873
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|60399773|gb|DN232583.1|DN232583
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CAGACCATTGGGACTCCCTCGTGCGTTTTCC--A--A- TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|211436012|gb|FL361903.1|FL361903
genomic: CAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCC-AA--A- TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|211522061|gb|FL312388.1|FL312388
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCC-AA--A- TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|13178341|gb|BG349599.1|BG349599
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCC-AA--A- TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|14242681|gb|BG840373.2|BG840373
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCC-AA--A- TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|74242180|gb|DT650094.1|DT650094
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: TGGGACTCCCTCGTGCGTTTTCC-AA--A- TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|76010926|gb|DT938096.1|DT938096
genomic: TGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|211186705|gb|FL252850.1|FL252850
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCC-AA--A- TCAGGTTGATGGCGATAGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|211186707|gb|FL252852.1|FL252852
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|211134484|gb|FL356345.1|FL356345
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCC-AA--A- TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|211186703|gb|FL252848.1|FL252848
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: AGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|32918930|gb|CF023742.1|CF023742
genomic: AGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAG TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGEST: gi|211453015|gb|FL324462.1|FL324462
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
EST: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCC-AA--A- TCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
genomic: CTGCTGGAAAAGCAGACCATTGGGACTCCCTCGTGCGTTTTCCAAATCAGgttcgttctt ... tgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAG
ttatccgggtattaccgtgacagatatttttattggctccatttctgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAAATCGCCTGCTGCTGCGCTGGTCAACAACTCCCTGACCAGATTCGG
ctccatttct CT-rich tract
acagatatttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttccgtaactataggtcacacgatgattattttctccgcgacattatccgggtattaccgtgacagatatttttattggctccatttctgccatgtagTCAGGTTGATGGCGATGGAGGGACCAGTTTTATGCCGCCCTGCAATGCAAGCCAAATCGCCTGCTGCTGCGCTGGTCAACAACTCCCTGACCAGATTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC