1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...taatagtacattttctctagtgcagcgatgccatatttttaccacttattttaccaattgcttactttcttgctatctttccattaccctgttggctcagGGATTGCATCTCAAGAATATGGGGAGAAAGAAGAACCCCATTGTCTTTCTGGATGTATCCGTAGGTGACGAGCCAGATGAAAGAATGATCTTTGAG
species | Zea mays |
transcript | GRMZM2G006107_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCGCGCCGACGCGATCAGCGCGTCGAGCCACCGGAGTCTCCCCTTGCG GGATTGCATCTCAAGAATATGGGGAGAAAGAAGAACCCCATTGTCTTTCTGEST: gi|94479119|gb|EB708077.1|EB708077
genomic: CACCGCGCCGACGCGATCAGCGCGTCGAGCCACCGGAGTCTCCCCTTGCGgttcgtgttc ... gttggctcagGGATTGCATCTCAAGAATATGGGGAGAAAGAAGAACCCCATTGTCTTTCTG
EST: CACCGCGCCGACGCGATCAGCGCGTCGAGCCACCGGAGTCTCCCCTTGCG GGATTGCATCTCAAGAATATGGGGAGAAAGAAGAACCCCATTGTCTTTCTGEST: gi|33467794|gb|CF244843.1|CF244843
genomic: CACCGCGCCGACGCGATCAGCGCGTCGAGCCACCGGAGTCTCCCCTTGCGgttcgtgttc ... gttggctcagGGATTGCATCTCAAGAATATGGGGAGAAAGAAGAACCCCATTGTCTTTCTG
EST: CACCGCGCCGACGCGATCAGCGCGTCGAGCCACCGGAGTCTCCCCTTGCG GGATTGCATCTCAAGAATATGGGGAGAAAGAAGAACCCCATTGTCTTTCTG
genomic: CACCGCGCCGACGCGATCAGCGCGTCGAGCCACCGGAGTCTCCCCTTGCGgttcgtgttc ... gttggctcagGGATTGCATCTCAAGAATATGGGGAGAAAGAAGAACCCCATTGTCTTTCTG
ttattttaccaattgcttactttcttgctatctttccattaccctgttggctcagGGATTGCATCTCAAGAATATGGGGAGAAAGAAGAACCCCATTGTCTTTCTGGATGTATCCGTAGGTGACGAGCCAGATGAAAGAATGATCTTTGAG
tgcttac putative branch site (score: 2)
ccctgtt putative PPT
ttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatagtacattttctctagtgcagcgatgccatatttttaccacttattttaccaattgcttactttcttgctatctttccattaccctgttggctcagGGATTGCATCTCAAGAATATGGGGAGAAAGAAGAACCCCATTGTCTTTCTGGATGTATCCGTAGGTGACGAGCCAGATGAAAGAATGATCTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA