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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggctcagctatccatgcattcaaattcaatcaatcctcccggctaatctgtcgatgtctgcactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCGGGATAGACTGCACGGGGGGCTTCCATCCGTCTCTCACGGCACTCGTCGA

Basic information

species Zea mays
transcript GRMZM2G005859_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G005859_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g01014.1 (Oryza sativa), 3'ss of exon 1
------------------------------------------gtgaggctcagctatccatgcattcaaatt--caatcaatcctcccg-gctaatctgtcgatg-tctgcactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCGGGATAGACTGCACGGGGGGCTTCCATCCGTCTCTCACGGCACTCGTCGA
                                           | |    ||  |    |   ||  |   |   |  |||   |   |   ||||      ||  ||||    |  ||||||| || |  |||||||||||  | ||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||| | || || || ||
gtactaacgactcctgttatttcatctacttttagtatttaaattaattccattttagtaataatcgatgctactatgcaacaattaagtaataatagaataataatctgatgggtgcagGGATTTATGCCGCCATGGCACTTACTGGGAGATTCATATGCCAGATGGCCGGAATAGACTGCACAGGGGGCTTCCATCCATCTCTCTCTGCGCTTGTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50335119|gb|CO530245.1|CO530245
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|149043962|gb|EE047444.2|EE047444
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|101392576|gb|EB818218.1|EB818218
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|211010141|gb|FL113888.1|FL113888
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|71445181|gb|DR826231.1|DR826231
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|78109220|gb|DV527636.1|DV527636
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|149090531|gb|EE179841.2|EE179841
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAAATTCATATGCCAAATG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATG
EST: gi|50338466|gb|CO533592.1|CO533592
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|76020246|gb|DT947416.1|DT947416
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCCCCGGGAGATTCATATGCCAAATGGCCG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|7844544|gb|AW787766.1|AW787766
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|211423764|gb|FL057577.1|FL057577
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|78180235|gb|DV550608.1|DV550608
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|211041393|gb|FL113883.1|FL113883
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCCTGGCACTCGCCGGGAGATTCATATGCCAAATGGCCC
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|76290855|gb|DV030423.1|DV030423
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|78091085|gb|DV519459.1|DV519459
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|91874018|gb|EB403975.1|EB403975
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAGATTC-TATGCCA
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCA
EST: gi|148964395|gb|EC905771.2|EC905771
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|149074609|gb|EE163014.2|EE163014
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCG
EST: gi|211010144|gb|FL113891.1|FL113891
EST:     CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTG                         GGATCTACGGGGCCATG
genomic: CGCCATGTGGGACAAGCTCGGGGCGGTCGTCAGGCTCAGCTATGGCATTGgtgaggctca ... cactgcacagGGATCTACGGGGCCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattcaaattcaatcaatcctcccggctaatctgtcgatgtctgcactgcacagGGATCTACGGGGCCATGGCACTCGCCGGGAGATTCATATGCCAAATGGCCGGGATAGACTGCACGGGGGGCTTCCATCCGTCTCTCACGGCACTCGTCGA
                         ggctaat  putative branch site (score: 3)
      aaattcaat  TA-rich tract