1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cgtcctgttcctgtactagtagtcctgaaatgctgaactatacgagtagctcagaagctaaatcttactccagcttccgtgattgtgtcccttttctcagAGGTTGATGAGAAGGATGTGAACCTGGATGCTGCGTTCAGTGTGCATGCTGGGATCGCACATACCAGGTGGGCCACGCACGGTGTGCCTGCTCCAAGGAA
species | Zea mays |
transcript | GRMZM2G005849_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTGCGATCCGTCTACTCCG AGGTTGATGAGAAGGATGTGAACCTGGATGCTGCGTTCAGTGTGCATGCTGEST: gi|149005284|gb|EE039833.2|EE039833
genomic: GTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTGCGATCCGTCTACTCCGgtcagcccac ... cttttctcagAGGTTGATGAGAAGGATGTGAACCTGGATGCTGCGTTCAGTGTGCATGCTG
EST: GTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTGCGATCCGTCTACTCCG AGGTTGATGAGAAGGATGTGAACCTGGATGCTGCGTTCAGTGTGCATGCTGEST: gi|89758439|gb|DY687617.1|DY687617
genomic: GTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTGCGATCCGTCTACTCCGgtcagcccac ... cttttctcagAGGTTGATGAGAAGGATGTGAACCTGGATGCTGCGTTCAGTGTGCATGCTG
EST: GTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTGCGATCCGTCTACTCCG AGGTTGATGAGAAGGATGTGAACCTGGATGCTGCGTTCAGTGTGCATGCTGEST: gi|149014772|gb|EE044464.2|EE044464
genomic: GTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTGCGATCCGTCTACTCCGgtcagcccac ... cttttctcagAGGTTGATGAGAAGGATGTGAACCTGGATGCTGCGTTCAGTGTGCATGCTG
EST: GTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTGCGATCCGTCTACTCCG AGGTTGATGAGAAGGATGTGAACCTGGATGCTGCGTTCAGTGTGCATGCTGEST: gi|148955140|gb|EC900657.2|EC900657
genomic: GTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTGCGATCCGTCTACTCCGgtcagcccac ... cttttctcagAGGTTGATGAGAAGGATGTGAACCTGGATGCTGCGTTCAGTGTGCATGCTG
EST: GTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTGCGATCCGTCTACTCCG AGGTTGATGAGAAGGATGTGAACCTGGATGCTGCGTTCAGTGTGCATGCTG
genomic: GTTCCGCCAGGAGGGCAAGATCGAGAACCTCGTGCGATCCGTCTACTCCGgtcagcccac ... cttttctcagAGGTTGATGAGAAGGATGTGAACCTGGATGCTGCGTTCAGTGTGCATGCTG
gtagctcagaagctaaatcttactccagcttccgtgattgtgtcccttttctcagAGGTTGATGAGAAGGATGTGAACCTGGATGCTGCGTTCAGTGTGCATGCTGGGATCGCACATACCAGGTGGGCCACGCACGGTGTGCCTGCTCCAAGGAA
atcttac putative branch site (score: 3)
ttgtgtcccttttctc putative PPT
taaatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtcctgttcctgtactagtagtcctgaaatgctgaactatacgagtagctcagaagctaaatcttactccagcttccgtgattgtgtcccttttctcagAGGTTGATGAGAAGGATGTGAACCTGGATGCTGCGTTCAGTGTGCATGCTGGGATCGCACATACCAGGTGGGCCACGCACGGTGTGCCTGCTCCAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA