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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcggaaattaaagcaatgttccccagtggagttgctatgtatatatcaaaattaaagcatgggcacattataacttgtttccttgttaatatttcataagGCACAGAACTCATGGACTAAGCTTGCTGTGGAGATCGACAGTCCACAAGCTATGTCTCTGGACCAGTTAGCCGATCCAGCCAATAGCACCTGTGCACAAG

Basic information

species Zea mays
transcript GRMZM2G005732_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G005732_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g49460.3 (Oryza sativa), 3'ss of exon 7
-tcggaaattaaagcaatgttccccagt--ggagttgctatgtatatatcaaaattaaagcatgg-gcacattataacttgtttccttgttaatatttcataagGCACAGAACTCATGGACTAAGCTTGCTGTGGAGATCGACAGTCCACAAGCTATGTCTCTGGACCAGTTAGCCGATCCAGCCAATAGCACCTGTGCACAAG
      ||| ||  | |  || |    |   ||  |  |   | || |||  | | |     ||  |  |||| |||  || || ||  | | | |||  |||||| |||| ||||||||| ||||  ||||| ||||| ||||||||||| ||||||||||  || || ||||| |||||| |  ||||||| ||||||||||
acttagaataaattccacattacaatattcagaaataattactgtagatcgga-tcactttgtgaagtgcatt-taaactggttgctcatcatttttt--taagGCGCAGAGCTCATGGACAAAGCGCGCTGTTGAGATTGACAGTCCACAGGCTATGTCTCCAGATCAATTAGCTGATCCACCTGATAGCACTTGTGCACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaaattaaagcatgggcacattataacttgtttccttgttaatatttcataagGCACAGAACTCATGGACTAAGCTTGCTGTGGAGATCGACAGTCCACAAGCTATGTCTCTGGACCAGTTAGCCGATCCAGCCAATAGCACCTGTGCACAAG
                                     ttgttaatatttcata  TA-rich tract