Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaattgtcctcttcctcttgcgattcatcccgttcttcatcggatgcgtcccgtccatcgcagatttgtacataatcagacctttttctacgctgtttttgagtgacaccccgcgtgctgaatcgtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTTGCTGCTCCTGCTGCTGCTGGCATCGTCGTTGTTACTGTCCGTCGTG

Basic information

species Zea mays
transcript GRMZM2G005493_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211458130|gb|FL012366.1|FL012366
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211458127|gb|FL012363.1|FL012363
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|149080694|gb|EE169755.2|EE169755
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211023369|gb|FK982681.1|FK982681
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211302405|gb|FL012357.1|FL012357
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211302401|gb|FL012353.1|FL012353
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211458128|gb|FL012364.1|FL012364
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211458140|gb|FL012376.1|FL012376
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211302399|gb|FL012351.1|FL012351
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211458138|gb|FL012374.1|FL012374
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211302400|gb|FL012352.1|FL012352
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211020950|gb|FK982676.1|FK982676
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211458126|gb|FL012362.1|FL012362
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211020949|gb|FK982675.1|FK982675
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|148979224|gb|EE026582.2|EE026582
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211458134|gb|FL012370.1|FL012370
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211302409|gb|FL012361.1|FL012361
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211460651|gb|FL012377.1|FL012377
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211458129|gb|FL012365.1|FL012365
EST:     GCCTCTTCGGCTCTTCGTTKGGGGTGCGTGGACACCGGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: GCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACC-GGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211302404|gb|FL012356.1|FL012356
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211458132|gb|FL012368.1|FL012368
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211302403|gb|FL012355.1|FL012355
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|32913601|gb|CF018413.1|CF018413
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211458133|gb|FL012369.1|FL012369
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211302408|gb|FL012360.1|FL012360
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211458135|gb|FL012371.1|FL012371
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|148950087|gb|EC895623.2|EC895623
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|32910736|gb|CF015548.1|CF015548
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211023371|gb|FK982683.1|FK982683
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211458139|gb|FL012375.1|FL012375
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|76286923|gb|DV026491.1|DV026491
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211460652|gb|FL012378.1|FL012378
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|21389921|gb|BQ527970.1|BQ527970
EST:     AGTCTCTTCGGCTCTTCGTTGGTGGTGCGTGGACACCGGAAATTACCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211020954|gb|FK982680.1|FK982680
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211458131|gb|FL012367.1|FL012367
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211458137|gb|FL012373.1|FL012373
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
EST: gi|211302406|gb|FL012358.1|FL012358
EST:     AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCG                         GGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT
genomic: AGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 263

GTTCAACCACCAGCCGAGTTCGCAGCGGCACTCCAGGGTCCAGGCCCAGCAGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTTGCTGCTCCTGCTGCTGCTGGCATCGTCGTTGTTACTGTCCGTCGTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 328

GTTCAACCACCAGCCGAGTTCGCAGCGGCACTCCAGGGTCCAGGCCCAGCAGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTTGCTGCTCCTGCTGCTGCTGGCATCGTCGTTGTTACTGTCCGTCGTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 385

GTTCAACCACCAGCCGAGTTCGCAGCGGCACTCCAGGGTCCAGGCCCAGCAGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTTGCTGCTCCTGCTGCTGCTGGCATCGTCGTTGTTACTGTCCGTCGTG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 428

GTTCAACCACCAGCCGAGTTCGCAGCGGCACTCCAGGGTCCAGGCCCAGCAGCCTCTTCGGCTCTTCGTTGGGGGTGCGTGGACACCGGAAATTGCCTCGgtaaggaatt ... gtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTTGCTGCTCCTGCTGCTGCTGGCATCGTCGTTGTTACTGTCCGTCGTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctttttctacgctgtttttgagtgacaccccgcgtgctgaatcgtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTTGCTGCTCCTGCTGCTGCTGGCATCGTCGTTGTTACTGTCCGTCGTG
                                              tgttctc  CT-rich tract
              tgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaggaattgtcctcttcctcttgcgattcatcccgttcttcatcggatgcgtcccgtccatcgcagatttgtacataatcagacctttttctacgctgtttttgagtgacaccccgcgtgctgaatcgtgttctcagGGGATTGCGTTCCTGATCTAAGCCCGGCATGAAGGGCTGCTCAGAGCGTTTGCTGCTCCTGCTGCTGCTGGCATCGTCGTTGTTACTGTCCGTCGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT