Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211518926|gb|FK961004.1|FK961004EST: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAG GCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCG
genomic: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAGgtattggcta ... tgaactgcagGCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCG
EST:
gi|149013303|gb|EE042886.2|EE042886EST: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAG GCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGC
genomic: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAGgtattggcta ... tgaactgcagGCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGC
EST:
gi|50324878|gb|CO520004.1|CO520004EST: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAG GCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGC
genomic: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAGgtattggcta ... tgaactgcagGCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGC
EST:
gi|148956743|gb|EC902623.2|EC902623EST: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAG GCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGC
genomic: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAGgtattggcta ... tgaactgcagGCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGC
EST:
gi|211518924|gb|FK961002.1|FK961002EST: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAG GCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGC
genomic: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAGgtattggcta ... tgaactgcagGCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGC
EST:
gi|149012375|gb|EE042561.2|EE042561EST: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAG GCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGC
genomic: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAGgtattggcta ... tgaactgcagGCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGC
EST:
gi|149014186|gb|EE043735.2|EE043735EST: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAG GCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGC
genomic: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAGgtattggcta ... tgaactgcagGCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGC
EST:
gi|149100636|gb|EE186724.2|EE186724EST: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAG GCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGC
genomic: CTGGCACCTGGACCGTTGGCCGCCGGTGGATGGTCATCAAGGGGAAGAAGgtattggcta ... tgaactgcagGCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttacaagcgttcagagcgcctaactgaaaacacaatgctgttctgaactgcagGCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGCCGGTAAAATGTTCTGATATGAAGACCCTCCGCTCCATGGTGCTGCCAAT
gcctaac putative branch site (score: 2)
ctgttct putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcagtccaaacagctggctttaccctttgccgataacaatttccaatttacaagcgttcagagcgcctaactgaaaacacaatgctgttctgaactgcagGCCTAAGCTGCAGGTCCCTGGATCAATATCTCCCGTTCCCAGCCCTCGCGCCGGTAAAATGTTCTGATATGAAGACCCTCCGCTCCATGGTGCTGCCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC