Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttacatacgagctcctctcctgcctcctatctctaccacctcgctcttgccggcttgtatgtaacaacgtatctgactggtggccggccggctcgctctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCAACCGGACGGGGCAGCCCTACATCCTGCAGACCAACGTGTTCACCGGCG

Basic information

species Zea mays
transcript GRMZM2G004699_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004699_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g33270.1 (Oryza sativa), 3'ss of exon 1
gtacgttacatacgagctcctctcctgcctcctatctctaccacctcgctcttgccggcttgtatgtaacaacgtatctgactggtggccggccggctcgctctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCAACCGGACGGGGCAGCCCTACATCCTGCAGACCAACGTGTTCACCGGCG
          ||||  | || |   |||  |||    ||    ||   ||  | |  | | | |  |  | | | || ||  ||||        |  | |    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||| ||||| ||| ||||||
---------gtacgc-cgccgccattgctccctgatcctcttccccttctgcttcttgatcggagat--cgatg-atgtg--tggttttt--ttgcattggggaatttgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGGAACAGGACGGGGGAGCCGTACATCCTGCAGACGAACGTCTTCTCCGGCG

upper sequence: GRMZM2G004699_T03 (Zea mays), 3'ss of exon 1
lower sequence: PP1S309_38V6.2 (Physcomitrella patens), 3'ss of exon 3
-------------------------------------------------------------------gtacgttac-atacgagctcctctcctgcctcctatctctac----cacctcgctcttgccg-gcttgtatgtaacaacgtatc-tgactggtggccggccggctcgctctat--ctgcagCTGTCGTCGCAGA-ACTCGGA--GCACGACGAGATCGACTTCGAGTTCCTGGGCAACCGGACGGGGCAGCCCTACATCCTGCAGACCAACGTGTTCACCGGCG
                                                                       ||| |  | | |    || | |||  |   |     |     |   | | ||   |||  ||| ||   | |||  |      |||    |    |     |  ||| |   || || ||||||| |||| ||  |||   || |||||||| ||||| |||||||| || ||   | |||||||||||||||||||||| ||||| || |   |     
gtaaccccgataccactgacttgactattagtgttctatttcagagatgaagttacgtgcacagaagaattgttgctgttcaattgtctgttctgatttgcagtagcatgctgcgggtagatcacaccgcacttctagagagcaatattctgcaactttcagtttacaaataccttctgtgattgtagATGTCGTCACAGACACCAGGATTACATGACGAGATGGACTTTGAGTTCCTTGGAAATGTGTCGGGGCAGCCCTACATCCTGCAAACCAATGTCTATGCGA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20301243|gb|BQ164186.1|BQ164186
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|78092103|gb|DV520477.1|DV520477
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|33467747|gb|CF244796.1|CF244796
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|9255437|gb|BE345905.1|BE345905
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|149083468|gb|EE172795.2|EE172795
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|71439011|gb|DR820061.1|DR820061
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|22819448|gb|BU499538.1|BU499538
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|78084131|gb|DV512524.1|DV512524
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|93284195|gb|EB676459.1|EB676459
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|89761345|gb|DY689393.1|DY689393
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|71330501|gb|DR802018.1|DR802018
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|93012237|gb|EB637757.1|EB637757
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|211298985|gb|FL169197.1|FL169197
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|71774104|gb|DR971986.1|DR971986
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|29130857|gb|CB381561.1|CB381561
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|26456139|gb|CA827722.1|CA827722
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|76018116|gb|DT945286.1|DT945286
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|76916744|gb|DV166531.1|DV166531
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|149108719|gb|EE292927.2|EE292927
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|71312169|gb|DR792608.1|DR792608
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|149102065|gb|EE287531.2|EE287531
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|50330462|gb|CO525588.1|CO525588
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|211298983|gb|FL169195.1|FL169195
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|23357642|gb|BU645291.1|BU645291
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|71757786|gb|DR955723.1|DR955723
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|78117391|gb|DV535778.1|DV535778
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|149072783|gb|EE161027.2|EE161027
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|211298979|gb|FL169191.1|FL169191
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|211296837|gb|FL169176.1|FL169176
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|50326237|gb|CO521363.1|CO521363
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|211296845|gb|FL169184.1|FL169184
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|37421332|gb|CF648364.1|CF648364
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTAC-AGTTCCTGGG
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTT-CGAGTTCCTGGG
EST: gi|148986547|gb|EE030306.2|EE030306
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|22546396|gb|BU098707.1|BU098707
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|148960072|gb|EE153316.2|EE153316
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|211296849|gb|FL169188.1|FL169188
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|148956114|gb|EC901879.2|EC901879
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|71768546|gb|DR966483.1|DR966483
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|149087856|gb|EE177138.2|EE177138
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|148935686|gb|EC879730.2|EC879730
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|71443011|gb|DR824061.1|DR824061
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|50329318|gb|CO524444.1|CO524444
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|211298984|gb|FL169196.1|FL169196
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|91867923|gb|EB399853.1|EB399853
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|148951884|gb|EC897657.2|EC897657
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|89757406|gb|DY687022.1|DY687022
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|71765374|gb|DR963311.1|DR963311
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|76924629|gb|DV170057.1|DV170057
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|71446933|gb|DR827983.1|DR827983
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|67016098|gb|CO444847.1|CO444847
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCATAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|74234087|gb|DT642001.1|DT642001
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|78108083|gb|DV526501.1|DV526501
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|91870082|gb|EB400692.1|EB400692
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|94473066|gb|EB702024.1|EB702024
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|71449513|gb|DR830563.1|DR830563
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|71448203|gb|DR829253.1|DR829253
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|22133536|gb|BQ833767.1|BQ833767
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|67026249|gb|CO454998.1|CO454998
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|89248253|gb|DY620039.1|DY620039
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|67018683|gb|CO447432.1|CO447432
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|22546122|gb|BU098443.1|BU098443
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|67039565|gb|CO465820.1|CO465820
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|101399106|gb|EB821426.1|EB821426
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|78119700|gb|DV538084.1|DV538084
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|67010732|gb|CO439481.1|CO439481
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|101398695|gb|EB821220.1|EB821220
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|71332535|gb|DR803236.1|DR803236
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|71766320|gb|DR964257.1|DR964257
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|211298981|gb|FL169193.1|FL169193
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|37423229|gb|CF649341.1|CF649341
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|76934461|gb|DV173895.1|DV173895
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|211298986|gb|FL169198.1|FL169198
EST:     ACATGAAGCTCKTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGGAGCACGACGAGATCGAC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGG-AGCACGACGAGATCGAC
EST: gi|148936701|gb|EC880831.2|EC880831
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|149077270|gb|EE165944.2|EE165944
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|149096995|gb|EE182798.2|EE182798
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|91055787|gb|EB166205.1|EB166205
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|148962796|gb|EE013713.2|EE013713
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|211296847|gb|FL169186.1|FL169186
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|29130239|gb|CB380943.1|CB380943
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|71332784|gb|DR803387.1|DR803387
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|76015298|gb|DT942468.1|DT942468
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|71327855|gb|DR800555.1|DR800555
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|148972378|gb|EE023300.2|EE023300
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|211296846|gb|FL169185.1|FL169185
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGGAGCACGACGAGATCGACTTCGAGTTCCTGGG
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGG-AGCACGACGAGATCGACTTCGAGTTCCTGGG
EST: gi|149085114|gb|EE174620.2|EE174620
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|211298980|gb|FL169192.1|FL169192
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
EST: gi|211296836|gb|FL169175.1|FL169175
EST:     ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTAC                         CTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC
genomic: ACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 363

CACGGGCTTCCAGACGCGGGGCTCCTACCTCTTCGGCCACTTCAGCATGCACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCAACCGGACGGGGCAGCCCTACATCCTGCAGACCAACGTGTTCACCGGCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 391

CACGGGCTTCCAGACGCGGGGCTCCTACCTCTTCGGCCACTTCAGCATGCACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCAACCGGACGGGGCAGCCCTACATCCTGCAGACCAACGTGTTCACCGGCG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 25

CACGGGCTTCCAGACGCGGGGCTCCTACCTCTTCGGCCACTTCAGCATGCACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCAACCGGACGGGGCAGCCCTACATCCTGCAGACCAACGTGTTCACCGGCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 82

CACGGGCTTCCAGACGCGGGGCTCCTACCTCTTCGGCCACTTCAGCATGCACATGAAGCTCGTCGGCGGCGACTCCGCGGGCACCGTCACGGCCTTCTACgtacgttaca ... ctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCAACCGGACGGGGCAGCCCTACATCCTGCAGACCAACGTGTTCACCGGCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgtatgtaacaacgtatctgactggtggccggccggctcgctctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCAACCGGACGGGGCAGCCCTACATCCTGCAGACCAACGTGTTCACCGGCG
                  atctgac  putative branch site (score: 82)
                                       ctcgctct  putative PPT
     tatgtaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgttacatacgagctcctctcctgcctcctatctctaccacctcgctcttgccggcttgtatgtaacaacgtatctgactggtggccggccggctcgctctatctgcagCTGTCGTCGCAGAACTCGGAGCACGACGAGATCGACTTCGAGTTCCTGGGCAACCGGACGGGGCAGCCCTACATCCTGCAGACCAACGTGTTCACCGGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG