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...ttccattccaagtgtagtaatcatagtaactggaagtctggaatttattcagtggcccgccaaactcggatgtaatgagtcttcactttctgacgtgcagTTACTGCCCTCAACACGCTGTTTACCAGCATGAATTCGCCGGGACAGCTGCAGGGCTGGAAGGTGAGTGGTGGCGACCCATGCGGCGAATCGTGGCAGGG
species | Zea mays |
transcript | GRMZM2G004572_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTAGACCCCGCGGCAAATCTTGGTTGCTGCAGCCACCGACGCGAATGATG TTACTGCCCTCAACACGCTGTTTACCAGCATGAATTCGCCGGGACAGCTGCEST: gi|76018777|gb|DT945947.1|DT945947
genomic: TTGGACCCCGCGGCAAATCTTGGTTGCTGCAGCCACCGACGCGAATGATGgtaggcgata ... tgacgtgcagTTACTGCCCTCAACACGCTGTTTACCAGCATGAATTCGCCGGGACAGCTGC
EST: TTGGACCCCGCGGCAAATCTTGGTTGCTGCAGCCACCGACGCGAATGATG TTACTGCCCTCAACACGCTGTTTACCAGCATGAATTCGCCGGGACAGCTGCEST: gi|74245639|gb|DT653553.1|DT653553
genomic: TTGGACCCCGCGGCAAATCTTGGTTGCTGCAGCCACCGACGCGAATGATGgtaggcgata ... tgacgtgcagTTACTGCCCTCAACACGCTGTTTACCAGCATGAATTCGCCGGGACAGCTGC
EST: TTGGACCCCGCGGCAAATCTTGGTTGCTGCAGCCACCGACGCGAATGATG TTACTGCCCTCAACACGCTGTTTACCAGCATGAATTCGCCGGGACAGCTGCEST: gi|78116943|gb|DV535330.1|DV535330
genomic: TTGGACCCCGCGGCAAATCTTGGTTGCTGCAGCCACCGACGCGAATGATGgtaggcgata ... tgacgtgcagTTACTGCCCTCAACACGCTGTTTACCAGCATGAATTCGCCGGGACAGCTGC
EST: TTGGACCCCGCGGCAAATCTTGGTTGCTGCAGCCACCGACGCGAATGATG TTACTGCCCTCAACACGCTGTTTACCAGCATGAATTCGCCGGGACAGCTGCEST: gi|74241625|gb|DT649539.1|DT649539
genomic: TTGGACCCCGCGGCAAATCTTGGTTGCTGCAGCCACCGACGCGAATGATGgtaggcgata ... tgacgtgcagTTACTGCCCTCAACACGCTGTTTACCAGCATGAATTCGCCGGGACAGCTGC
EST: TTGGACCCCGCGGCAAATCTTGGTTGCTGCAGCCACCGACGCGAATGATG TTACTGCCCTCAACACGCTGTTTACCAGCATGAATTCGCCGGGACAGCTGC
genomic: TTGGACCCCGCGGCAAATCTTGGTTGCTGCAGCCACCGACGCGAATGATGgtaggcgata ... tgacgtgcagTTACTGCCCTCAACACGCTGTTTACCAGCATGAATTCGCCGGGACAGCTGC
tattcagtggcccgccaaactcggatgtaatgagtcttcactttctgacgtgcagTTACTGCCCTCAACACGCTGTTTACCAGCATGAATTCGCCGGGACAGCTGCAGGGCTGGAAGGTGAGTGGTGGCGACCCATGCGGCGAATCGTGGCAGGG
ttctgac putative branch site (score: 76)
tcttcactttct CT-rich tract
atgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccattccaagtgtagtaatcatagtaactggaagtctggaatttattcagtggcccgccaaactcggatgtaatgagtcttcactttctgacgtgcagTTACTGCCCTCAACACGCTGTTTACCAGCATGAATTCGCCGGGACAGCTGCAGGGCTGGAAGGTGAGTGGTGGCGACCCATGCGGCGAATCGTGGCAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG