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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgttgcctacgtgcagctcgttgtgttacggtgtccgccacctgtctttgtctaacggatgatgctgtctttttctgccctgatggtgcagGGTCATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA

Basic information

species Zea mays
transcript GRMZM2G004528_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004528_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 1
gcatgttgcctacgtgcagctcgttgtgttacggtgtccgccacctgtctttgt-ctaacggatgatgctgtctttttctgcc------ctgatggtgcagGGTCATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA
 ||       |   |     |  || | |  |  |||  || || || |      ||    ||| ||| |   |    | |        |||  |||||||||| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||
tcaccccatttgttt-tgtttttttttctgtccatgttggctacgtgccagcacacttgtcgatcatgtttcttgacccagttttatggctgtgggtgcagGGTGATGCTCGTGGGGTGGGGCGGCAACAACGGCTCAACGCTGACGGCTGGGGTCATCGCCAACAGGGA

upper sequence: GRMZM2G004528_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S267_10V6.1 (Physcomitrella patens), 3'ss of exon 1
---gcatgttgcctacgtgcagctcgttgtgttacggtgtccgccacc-tgtctttgtct--aacggatgatgctgtctttt-tctgccctgatggtgcagGGTCATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA
   ||   ||| |  || | |  |   ||    | |   | ||  |   ||  |||| |    | | || || |||  || | | ||    |    |||||  | |||||||| |||||||| ||||||||||| ||||| || ||||||||  |  |||| ||||| ||
cccgctccttggc-gcgcgaacatttctggagaatgtctttcgtaatagtggttttgacacagatgaataattctgggttgtgtgtggtgggtacctgcagAATGATGCTTGTTGGGTGGGGCGGCAACAACGGATCCACTCTCACGGCTGGTATTCTTGCTAACAGAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccacctgtctttgtctaacggatgatgctgtctttttctgccctgatggtgcagGGTCATGCTTGTGGGGTGGGGAGGCAACAACGGGTCCACGCTGACGGCTGGGGTCATTGCCAACAGGGA
                               tctttttctgccctg  CT-rich tract
                               tcttttt  TA-rich tract