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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgcccttccatcgtgcccgctttcccctttgcttcgcttttcgcctttgcacttgttgcacctaccaaacgatcgcgtccctgagtgctgcatgttaagctcttcgctcgcctctgcagGACCGGGAGGCTATACAGCTCCCTGGGCTCTTCCCGCCGGCGTTCGGCGGCGGTGTGCAGCCACCCCACCTCCGCGCCACCCCGCCTACACAG

Basic information

species Zea mays
transcript GRMZM2G004356_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004356_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g58330.1 (Oryza sativa), 3'ss of exon 1
------gtgagcgcccttccatcgtgcccgctttcccctttgcttcgc---ttttcgcctttgcacttgttgcacctaccaaac---gatcgcgtccctgagtgct-gcatgttaagctcttcgctcgcctctgcagGACCGGGAGGCTATACAGCTCCCTGGGCTCTTCCCGCCGGCGTTCGGCGGCGGTG---TGCAGCCACCCCACCTCCGCGCCACCCCGCCTACACAG
      | | |||| |   ||     | | |  || |  |  |||  |   |||| || |||||  | | |   |       |    || ||    |  | ||||| || || ||||||    ||||||||||| |||| |||||| |  | |||||| | || ||||||||||||| |||||||||||| |   ||||||| ||  |||||||| ||||||||||||| |||
gtgagtgcgcgcgcgcgcgcaatcctctctccctctcgctaactttccccatttttgcttttgcgttggctctcctcgttcgagtgggaacggaggcgcgtgtgcttgcgtgataagcttcgagctcgcctctgtagGATCGGGAGACCGTGCAGCTCACCGGACTCTTCCCGCCGGTGTTCGGCGGCGGCGGCGTGCAGCCGCCGAACCTCCGCCCCACCCCGCCTACCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211352257|gb|FL117817.1|FL117817
EST:     CGGCCGCTGAGGCTTCSGGAAGCGGGAAGCACGCCGACGGTGGCAAGGCG                         GACCGGGAGGCTATACAGCTCCCTGGGCTCTTCCCGCCGGCGTTCGGCGGC
genomic: CGGCCGCTGAGGCTTCCGGAAGCGGGAAGCACGCCGACGGTGGCAAGGCGgtgagcgccc ... gcctctgcagGACCGGGAGGCTATACAGCTCCCTGGGCTCTTCCCGCCGGCGTTCGGCGGC
EST: gi|26456061|gb|CA827644.1|CA827644
EST:     CGGCCGCTGAGGCTTCCGGAAGCGGGAAGCACGCCGACGGTGGCAAGGCG                         GACCGGGAGGCTATACAGCTCCCTGGGCTCTTCCCGCCGGCGTTCGGCGGC
genomic: CGGCCGCTGAGGCTTCCGGAAGCGGGAAGCACGCCGACGGTGGCAAGGCGgtgagcgccc ... gcctctgcagGACCGGGAGGCTATACAGCTCCCTGGGCTCTTCCCGCCGGCGTTCGGCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaaacgatcgcgtccctgagtgctgcatgttaagctcttcgctcgcctctgcagGACCGGGAGGCTATACAGCTCCCTGGGCTCTTCCCGCCGGCGTTCGGCGGCGGTGTGCAGCCACCCCACCTCCGCGCCACCCCGCCTACACAG
                                   ctcttcgctcgcctct  CT-rich tract
                           atgttaa  TA-rich tract