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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagtatggcggattctgaaaccaggcgcagatctgcttggttatgatgcggatttgctgcttgtctaacatgttgctgactgctgtgtgatatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTCCCCAAGGGGAAGCCGGTGGCTGTCGTCGTGCTGGACGGATGGGGCGAGG

Basic information

species Zea mays
transcript GRMZM2G003385_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G003385_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g60190.1 (Oryza sativa), 3'ss of exon 1
cagtatggcggattctgaaaccaggcgcagat-ctgcttggttatgatgcggatttgctgcttgtctaacatgttgctgactgctgtg----tgatatttggtagGT-------TTCGTTGGCGATGGCGAGC---------TCGTGGACGCTTCCTGACCACCCGAAGCTCCCCAAGGGGAAGCCGGTGGCTGTCGTCGTGCTGGACGGATGGGGCGAGG
    ||    | |     ||  | | | || | |||   || | |||   |||||||||||   |      |||  ||||    || |    ||  |||||||||||        | || |||||||||||||         || |||||||| || |||||||| |||||||||||||||||| |||| ||  ||||||||||                 
--tgatattagttgacttaattatgtgtagtttctgtacggatctga---ggatttgctgcacctaactgttgtatctgagctttgcgttggtgtgatttggtagGTATAGCATCTAGTAGGCGATGGCGAGCTCCGGTTTCTCATGGACGCTGCCCGACCACCCCAAGCTCCCCAAGGGGAAGACGGTAGCCCTCGTCGTGCTT----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211019714|gb|FL393633.1|FL393633
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTNCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211278872|gb|FL399990.1|FL399990
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211313367|gb|FL401426.1|FL401426
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211219836|gb|FL409202.1|FL409202
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211099729|gb|FL381202.1|FL381202
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211210131|gb|FL414761.1|FL414761
EST:     GTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: GTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211121710|gb|FL408176.1|FL408176
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211199735|gb|FL411304.1|FL411304
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211488053|gb|FL402002.1|FL402002
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCAAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211351025|gb|FL403666.1|FL403666
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211440955|gb|FL371600.1|FL371600
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211234219|gb|FL407548.1|FL407548
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211215516|gb|FL427991.1|FL427991
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|78085788|gb|DV514181.1|DV514181
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211317757|gb|FL419313.1|FL419313
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|67022870|gb|CO451619.1|CO451619
EST:     TTCTTGTTTAGGCGAAGGCAAAAGCAGGAGCAAAAA-                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAA-CTC
genomic: TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211157888|gb|FL375852.1|FL375852
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211027667|gb|FL415081.1|FL415081
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211155260|gb|FL415189.1|FL415189
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|76021242|gb|DT948412.1|DT948412
EST:     GCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: GCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211502486|gb|FL420285.1|FL420285
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211379258|gb|FL380070.1|FL380070
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211231748|gb|FL386170.1|FL386170
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211146070|gb|FL408651.1|FL408651
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211490641|gb|FL393008.1|FL393008
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211311836|gb|FL427597.1|FL427597
EST:     GTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: GTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211444064|gb|FL415892.1|FL415892
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211236397|gb|FL403469.1|FL403469
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211397434|gb|FL369350.1|FL369350
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211298567|gb|FL375549.1|FL375549
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211392275|gb|FL373437.1|FL373437
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211445807|gb|FL398454.1|FL398454
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211166531|gb|FL421331.1|FL421331
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211219895|gb|FL414355.1|FL414355
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211106346|gb|FL370787.1|FL370787
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211005730|gb|FL388917.1|FL388917
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211513447|gb|FL380257.1|FL380257
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211485158|gb|FL401978.1|FL401978
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|9742843|gb|BE518991.1|BE518991
EST:     AAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: AAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|31611945|gb|CD568567.1|CD568567
EST:     CAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: CAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211256764|gb|FL400904.1|FL400904
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCAAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211527387|gb|FL402925.1|FL402925
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211324178|gb|FL424990.1|FL424990
EST:     TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
EST: gi|211288434|gb|FL410131.1|FL410131
EST:     TCGCCAAGAGTTCTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAG                         GTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC
genomic: TCGCCCAGAG---TTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 328

TATTAATATCGCCGTCGCCTCGCACCTCCCTTTGTTCCGTCGCCCCGCATTGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTCCCCAAGGGGAAGCCGGTGGCTGTCGTCGTGCTGGACGGATGGGGCGAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 444

TATTAATATCGCCGTCGCCTCGCACCTCCCTTTGTTCCGTCGCCCCGCATTGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTCCCCAAGGGGAAGCCGGTGGCTGTCGTCGTGCTGGACGGATGGGGCGAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 544

TATTAATATCGCCGTCGCCTCGCACCTCCCTTTGTTCCGTCGCCCCGCATTGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTCCCCAAGGGGAAGCCGGTGGCTGTCGTCGTGCTGGACGGATGGGGCGAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 434

TATTAATATCGCCGTCGCCTCGCACCTCCCTTTGTTCCGTCGCCCCGCATTGCTCGCCCAGAGTTCTTGTTTAGGCAAAGGCAAAAGCAGGAGCAAAAAGgtaagaacac ... tatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTCCCCAAGGGGAAGCCGGTGGCTGTCGTCGTGCTGGACGGATGGGGCGAGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcggatttgctgcttgtctaacatgttgctgactgctgtgtgatatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTCCCCAAGGGGAAGCCGGTGGCTGTCGTCGTGCTGGACGGATGGGGCGAGG
                            tgctgac  putative branch site (score: 434)
                                          tgatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cagtatggcggattctgaaaccaggcgcagatctgcttggttatgatgcggatttgctgcttgtctaacatgttgctgactgctgtgtgatatttggtagGTTTCGTTGGCGATGGCGAGCTCGTGGACGCTTCCTGACCACCCGAAGCTCCCCAAGGGGAAGCCGGTGGCTGTCGTCGTGCTGGACGGATGGGGCGAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - gattctg
- - - - - - - - - - - - - - - - -tgcttgg
- - - - - - - - - - - - - - - - - - - - - atgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - tttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgctg