Sequence
atgc intronic sequence ATGC exonic sequence...ttgtaggttgtagctgcagctaattatagctcttaagttattgaagtctatttcatctgtcaacaactcggtattcagtcatatgaacctgtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G003096_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g07090.1 (Oryza sativa), 3'ss of exon 1
------ttgtaggttgtagctgca--gctaattatagctcttaagttattgaagtctatttcatctgtcaacaactcggtattcagtcatatgaacctgtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAAG
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ctgctaatatatatttcagtctcactgataatttcagtctttagttatttctagtgtgcttcatctgtca--------gtgtttggtaatgtgagcctgtaattgtagGTTGGAAGCTGTGTTAACTATTGGAACTCATCTAATACCACACCCAAGAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76281784|gb|DV021352.1|DV021352EST: CCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAA GTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAA
genomic: CCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAAgtacggccgt ... gtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtctatttcatctgtcaacaactcggtattcagtcatatgaacctgtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAAG
atatgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgtaggttgtagctgcagctaattatagctcttaagttattgaagtctatttcatctgtcaacaactcggtattcagtcatatgaacctgtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA