1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgtaggttgtagctgcagctaattatagctcttaagttattgaagtctatttcatctgtcaacaactcggtattcagtcatatgaacctgtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAAG
species | Zea mays |
transcript | GRMZM2G003096_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAA GTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAAEST: gi|211152122|gb|FL081696.1|FL081696
genomic: CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAAgtacggccgt ... gtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAA
EST: CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCA-SCAA GTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAAEST: gi|211152126|gb|FL081700.1|FL081700
genomic: CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAAgtacggccgt ... gtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAA
EST: CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAA GTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAAEST: gi|60352390|gb|DN219363.1|DN219363
genomic: CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAAgtacggccgt ... gtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAA
EST: CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAA GTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAAEST: gi|211236843|gb|FL081704.1|FL081704
genomic: CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAAgtacggccgt ... gtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAA
EST: CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAA GTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAAEST: gi|211152129|gb|FL081703.1|FL081703
genomic: CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAAgtacggccgt ... gtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAA
EST: CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCCA GTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAA
genomic: CTTCATCCTCCAAACCGCCGCTCGCGCTTCTCCCCTGTTCGCGCAGCCAAgtacggccgt ... gtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAA
gtctatttcatctgtcaacaactcggtattcagtcatatgaacctgtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAAG
atatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtaggttgtagctgcagctaattatagctcttaagttattgaagtctatttcatctgtcaacaactcggtattcagtcatatgaacctgtcattgtagGTTGGAAGCTGTGCTGTCTATTGGTGCTCATCTAATCCCACACCCAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA