Sequence
atgc intronic sequence ATGC exonic sequence...gtgctggtttgatttgtggtcttgtgggacgaattgagagaggcggcactgtaacgtctgccgagaattctgaattcgcggtgtttaatttctattgcagGTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G003076_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os10g39220.1 (Oryza sativa), 3'ss of exon 1
---gtgctggtttgatttgtggtcttgtgggacgaattgagagaggcggcactgtaacgtctgccgagaattctgaattcgc--ggtgtttaatttctattgcagGTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG
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taaactttgggtgtttctgaatttctgatggatatcttgag----gctgggtcatgagcgttgt-aagaaatctaaatttttttggggcttgatttctcttgtagGTCCAATTGATCAGAATCGAATGTAGGGTGCCCGAATACGGGTGGACAACACAAAAGGTGTTCCATTTCCTCAACTTCCTCGTGAACGGCG
upper sequence: GRMZM2G003076_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv01s0010g01740.t01 (Vitis vinifera), 3'ss of exon 1
gtgctggtttgatttgtggtcttgtgggacgaattgagagaggcggcactgtaacgtctgccgagaattctgaattcgcggtgtttaatt--tctattgcagGTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG
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-tttctttatgaatcttcttttccataaacgaaac-agagtgatttttttgtttttttttttttaaatttctaatctgatattatttcttaattttttaaagGTTCAACTGGTTCGGATACAATTGAGAGTCCCAGAGTATGGTTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGG
upper sequence: GRMZM2G003076_T02 (Zea mays), 3'ss of exon 1
lower sequence: EDP05347 (Chlamydomonas reinhardtii), 3'ss of exon 2
gtgctggtttgatttgtggtcttgtgggacgaattgagagaggcggcactgtaacgtctgccgagaattctgaattcgcggtgtttaatttctattgcagGTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG----------
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-----------------------------------gtgagtacacgagtcgtcggttccgcc---aactcggaaggctcacactgagaataattgcgcagGTACAACTGCTGCGGCTGCAGCTGCGCGTGCCAGAGTATGGCTGGACCACCCAGAAGGTGTTCCACCTTCTAAACTGCTTGGTGT-CTGTGCTGCGCTGCT
upper sequence: GRMZM2G003076_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ15891 (Selaginella moellendorffii), 3'ss of exon 1
gtgctggtttgatttgtggtcttgtgggacgaattgagagaggcggcactgtaacgtctgccgagaattctg--aattcgcggtgtttaatttctattgcagGTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG
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---------------------------------gtaagttagttgattcttgtaagttagctgtgtttcctatcgattttct-tcctttgtttctttt--agATCCAACTCGTTAGAATACAAATCCGGGTGCCGGAGTATGGCTGGACAACGCAGAAAGTGTTCCATCTCCTCAATTTCTTTGTAAATGGAG
upper sequence: GRMZM2G003076_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ33253 (Selaginella moellendorffii), 3'ss of exon 1
gtgctggtttgatttgtggtcttgtgggacgaattgagagaggcggcactgtaacgtctgccgagaattctgaattcgcggtgtttaatttctattgcagGTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG
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---------------------------------gtaagttagttgattcttgtaagttagctgtgtttccta---tcg----attttcttcctttgttagATCCAACTCGTTAGAATACAAATCCGGGTGCCGGAGTATGGCTGGACAACGCAGAAAGTGTTCCATCTCCTCAATTTCTTTGTAAATGGAG
upper sequence: GRMZM2G003076_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ23006 (Selaginella moellendorffii), 3'ss of exon 1
gtgctggtttgatttgtggtcttgtgggacgaattgagagaggcggcactgtaacgtctgccgagaattctgaattcgcggtgtttaatttctattgcagGTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG
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--------------------------gtatggaatccgactagttttctggtcttttctattgattcttggggaatcgtggcg----atttctctcgcagATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACCACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAG
upper sequence: GRMZM2G003076_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ30530 (Selaginella moellendorffii), 3'ss of exon 1
gtgctggtttgatttgtggtcttgtgggacgaattgagagaggcggcactgtaacgtctgccgagaattctgaattcgcggtgtttaatttctattgcagGTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG
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-------------------------gtatggaatccggctagtttgt-tggtcttttctattgattctcggggaatcgtggcg----atttctctcgcagATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACGACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211382284|gb|FL169263.1|FL169263EST: TATTTCACGCGCTCGCCGTGCTCTACGGCATCGTCTCGGCCGTCGCGCTG GTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACG
genomic: TATTTCACGCGCTCGCCGTGCTCTACGGCATCGTCTCGGCCGTCGCGCTGgtaagcaccc ... tctattgcagGTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcactgtaacgtctgccgagaattctgaattcgcggtgtttaatttctattgcagGTCCAATTAATCAGAATCGAGTGTAGGGTGCCAGAGTATGGATGGACAACGCAGAAGGTGTTCCATTTTCTAAACTTCCTTGTGAACGGCG
tttctatt CT-rich tract
tgtttaatttctatt TA-rich tract