1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagcgtgccacgccgcccctttctcaagatctccgccatccgttcctccgcgacccggccgcgggctcgcaccgtccggctcccgcccgttcttttaacgcggctccttcgagatctggttgtcgtctctaggtttgttattgatcactgatgccgcctccgtgctcgcggccgcacgtgtcctgttccgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCGAACGAGGCCGAGGCGCAACAGCACTCCAAGCTCGAGAAGCTCTACATCT
species | Zea mays |
transcript | GRMZM2G002859_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCGGAAGCAGGCCTAAAAGTTCCGGGAGCAGGTGGCTCGGCAGCAGCAG GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCGEST: gi|50324117|gb|CO519243.1|CO519243
genomic: TCCGGAAGCAGGCCTCAAAGTTCCGGGAGCAGGTGGCTCGGCAGCAGCAGgtgagcgtgc ... tgttccgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCG
EST: TCCGGAAGCAGGCCTCAAAGTTCCGGGAGCAGGTGGCTCGGCAGCAGCAG GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCGEST: gi|71307048|gb|DR789679.1|DR789679
genomic: TCCGGAAGCAGGCCTCAAAGTTCCGGGAGCAGGTGGCTCGGCAGCAGCAGgtgagcgtgc ... tgttccgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCG
EST: TCCGGAAGCAGGCCTCAAAGTTCCGGGAGCAGGTGGCTCGGCAGCAGCAG GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCGEST: gi|148959420|gb|EC905446.2|EC905446
genomic: TCCGGAAGCAGGCCTCAAAGTTCCGGGAGCAGGTGGCTCGGCAGCAGCAGgtgagcgtgc ... tgttccgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCG
EST: TCCGGAAGCAGGCCTCAAAGTTCCGGGAGCAGGTGGCTCGGCAGCAGCAG GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCGEST: gi|148986437|gb|EE030179.2|EE030179
genomic: TCCGGAAGCAGGCCTCAAAGTTCCGGGAGCAGGTGGCTCGGCAGCAGCAGgtgagcgtgc ... tgttccgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCG
EST: TCCGGAAGCAGGCCTCAAAGTTCCGGGAGCAGGTGGCTCGGCAGCAGCAG GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCG
genomic: TCCGGAAGCAGGCCTCAAAGTTCCGGGAGCAGGTGGCTCGGCAGCAGCAGgtgagcgtgc ... tgttccgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCG
tattgatcactgatgccgcctccgtgctcgcggccgcacgtgtcctgttccgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCGAACGAGGCCGAGGCGCAACAGCACTCCAAGCTCGAGAAGCTCTACATCT
cactgat putative branch site (score: 3)
tcctgttcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgtgccacgccgcccctttctcaagatctccgccatccgttcctccgcgacccggccgcgggctcgcaccgtccggctcccgcccgttcttttaacgcggctccttcgagatctggttgtcgtctctaggtttgttattgatcactgatgccgcctccgtgctcgcggccgcacgtgtcctgttccgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCGAACGAGGCCGAGGCGCAACAGCACTCCAAGCTCGAGAAGCTCTACATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC